OpenSourceBrain · ddelpiano · Mar 19, 2026 · Mar 24, 2026 · Mar 25, 2026 · Mar 25, 2026
diff --git a/applications/accounts-api/Dockerfile b/applications/accounts-api/Dockerfile
@@ -13,5 +13,3 @@ RUN pip3 install --no-cache-dir -r requirements.txt
 COPY backend /usr/src/app
 
 RUN pip3 install -e .
-
-ENTRYPOINT gunicorn --workers=$WORKERS --bind=0.0.0.0:$PORT $MODULE_NAME.__main__:app
diff --git a/applications/accounts-api/backend/requirements.txt b/applications/accounts-api/backend/requirements.txt
@@ -1,11 +1,9 @@
-connexion[swagger-ui] >= 2.6.0; python_version>="3.6"
-# 2.3 is the last version that supports python 3.4-3.5
-connexion[swagger-ui] <= 2.3.0; python_version=="3.5" or python_version=="3.4"
-# connexion requires werkzeug but connexion < 2.4.0 does not install werkzeug
-# we must peg werkzeug versions below to fix connexion
-# https://github.com/zalando/connexion/pull/1044
-werkzeug == 2.2.3; python_version=="3.5" or python_version=="3.4"
-swagger-ui-bundle >= 0.0.2
-python_dateutil >= 2.6.0
-setuptools >= 21.0.0
-cloudharness
+connexion[swagger-ui,flask,uvicorn]>=3.0.0,<4.0.0
+swagger-ui-bundle>=1.1.0
+python_dateutil>=2.9.0
+setuptools>=21.0.0
+uvicorn
+# Following some unnecessary requirements to make sure they can be installed
+psycopg2-binary
+sqlalchemy<2.0.0
+scipy
diff --git a/applications/accounts-api/backend/setup.py b/applications/accounts-api/backend/setup.py
@@ -14,10 +14,10 @@
 # http://pypi.python.org/pypi/setuptools
 
 REQUIRES = [
-    "connexion>=2.0.2",
-    "swagger-ui-bundle>=0.0.2",
-    "python_dateutil>=2.6.0",
-    "cloudharness"
+    "connexion[swagger-ui,flask,uvicorn]>=3.0.0,<4.0.0",
+    "Flask",
+    "swagger-ui-bundle",
+    "cloudharness",
 ]
 
 setup(

diff --git a/applications/accounts/deploy/resources/realm.json b/applications/accounts/deploy/resources/realm.json
@@ -322,6 +322,34 @@
                     "offline_access",
                     "microprofile-jwt"
                 ]
+            },
+            {
+                "clientId": "idp-arc",
+                "name": "idp-arc",
+                "enabled": true,
+                "publicClient": true,
+                "standardFlowEnabled": true,
+                "implicitFlowEnabled": false,
+                "directAccessGrantsEnabled": false,
+                "serviceAccountsEnabled": false,
+                "protocol": "openid-connect",
+                "rootUrl": "{{ .Values.idpArc.rootUrl }}",
+                "redirectUris": [
+                    "{{ .Values.idpArc.rootUrl }}/*"
+                ],
+                "webOrigins": [
+                    "{{ .Values.idpArc.rootUrl }}"
+                ],
+                "attributes": {
+                    "pkce.code.challenge.method": "S256"
+                },
+                "fullScopeAllowed": true,
+                "defaultClientScopes": [
+                    "web-origins", "profile", "roles", "email"
+                ],
+                "optionalClientScopes": [
+                    "offline_access", "{{ .Values.apps.accounts.admin.role }}-scope"
+                ]
             }
         ],
         "clientScopes": [

diff --git a/applications/jupyterlab/Dockerfile b/applications/jupyterlab/Dockerfile
@@ -77,15 +77,15 @@ USER root
 RUN conda install conda-forge::nest-simulator
 ENV NEST_HOME=/opt/conda
 
-USER jovyan
-
-#### Install Python packages
+#### Install Python packages (as root to avoid permission issues with conda-managed packages)
 
 RUN --mount=type=cache,target=/root/.cache python -m pip install --upgrade pip && \ 
     pip install backports.tarfile>=1.2 # temp fix for error: ImportError: cannot import name 'tarfile' from 'backports'
 RUN --mount=type=cache,target=/root/.cache python -m pip install --upgrade pip &&\ 
     pip install -r requirements.txt --upgrade --no-cache-dir
 
+USER jovyan
+
 #  Compile NEURON mod files for PyNN
 RUN cd /opt/conda/lib/python3.12/site-packages/pyNN/neuron/nmodl && nrnivmodl
 

diff --git a/applications/jupyterlab/requirements.txt b/applications/jupyterlab/requirements.txt
@@ -3,7 +3,7 @@ pyelectro
 neurotune
 
 ####  NEURON & NetPyNE
-neuron
+neuron<9
 
 # Install specific version of NetPyNE
 git+https://github.com/Neurosim-lab/netpyne.git@osbv2#egg=netpyne

diff --git a/applications/netpyne/Dockerfile b/applications/netpyne/Dockerfile
@@ -1,6 +1,6 @@
 
 
-FROM node:18 AS jsbuild
+FROM node:16-bullseye AS jsbuild
 ARG APP_DIR=dependencies/NetPyNE-UI
 ENV FOLDER=netpyne
 

diff --git a/deployment-configuration/values-template-dev.yaml b/deployment-configuration/values-template-dev.yaml
@@ -1,2 +1,12 @@
 backup:
-  active: false
+  active: false
+
+idpArc:
+  rootUrl: "https://idp-arc.idp-arc.dev.metacell.us"
+
+ingress:
+  annotations:
+    nginx.ingress.kubernetes.io/enable-cors: "true"
+    nginx.ingress.kubernetes.io/cors-allow-origin: "https://idp-arc.idp-arc.dev.metacell.us"
+    nginx.ingress.kubernetes.io/cors-allow-credentials: "true"
+    nginx.ingress.kubernetes.io/cors-allow-headers: "Authorization, Content-Type"
diff --git a/deployment/codefresh-dev.yaml b/deployment/codefresh-dev.yaml
@@ -31,7 +31,7 @@ steps:
         title: Cloning NetPyNE-UI.git repository...
         type: git-clone
         repo: https://github.com/MetaCell/NetPyNE-UI.git
-        revision: 1.1.0
+        revision: osb2-dev
         working_directory: applications/netpyne/dependencies/
         git: github
       clone_nwb-explorer_git_development_nwb-explorer:
Original file line number	Diff line number	Diff line change
Expand Up		@@ -13,5 +13,3 @@ RUN pip3 install --no-cache-dir -r requirements.txt
		COPY backend /usr/src/app

		RUN pip3 install -e .

		ENTRYPOINT gunicorn --workers=$WORKERS --bind=0.0.0.0:$PORT $MODULE_NAME.__main__:app