OpenMS · jpfeuffer · Dec 14, 2022 · Dec 14, 2022 · Dec 14, 2022 · Dec 14, 2022
diff --git a/.github/workflows/test-pr.yaml b/.github/workflows/test-pr.yaml
@@ -37,9 +37,7 @@ jobs:
 
     - name: Installing Dependencies
       run: |
-        python3 -m pip install --upgrade pip
-        python3 -m pip install --upgrade pandocfilters jupyter
-        python3 -m pip install --upgrade -r requirements.txt
+        $CONDA/bin/conda env update --file environment.yml --name base
 
 
     - name: Generating notebooks

diff --git a/environment.yml b/environment.yml
@@ -1,10 +1,11 @@
 name: binder-env
+channels:
+  - conda-forge
+  - bioconda
+  - openms
 dependencies:
-- python=3.10
-#- bioconda::pyopenms maybe not needed because we install it in a post-build event
-- pip
-
-- pip:
+  - python=3.10
+  - pyopenms
   - matplotlib
   - plotly
   - pandas
@@ -16,4 +17,6 @@ dependencies:
   - holoviews
   - pyviz_comms
   - jupyter-server-proxy
-  - massql
+  - pip
+  - pip:
+    - massql
diff --git a/postBuild b/postBuild