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Add "composed" models allowing multiple post-synaptic receptor types #771

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apdavison merged 17 commits into from
Feb 1, 2023
Merged

Add "composed" models allowing multiple post-synaptic receptor types #771

apdavison merged 17 commits into from
Feb 1, 2023

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@apdavison apdavison commented Feb 1, 2023 •
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This corresponds to the "multisynapse" models in NEST.

Note that this part of the API is optional for backends. This PR includes the implementation for NEURON, NEST, Brian 2.

Example:

celltype = sim.PointNeuron(
                sim.AdExp(tau_m=10.0, v_rest=-60.0),
                AMPA=sim.AlphaPSR(tau_syn=1.0, e_syn=0.0),
                NMDA=sim.AlphaPSR(tau_syn=20.0, e_syn=0.0),
                GABAA=sim.AlphaPSR(tau_syn=1.5, e_syn=-70.0),
                GABAB=sim.AlphaPSR(tau_syn=15.0, e_syn=-90.0))

apdavison and others added 15 commits May 18, 2022 17:31
@apdavison
Manual "rebase" of multisynapse2 branch on top of latest master
931e0c0
@Racagnol
Adding beta synapses for multisynapse models in nest
133d813
@Racagnol
Adding the possibility to record conductances from the multisynapses …
20acee9 
…model
@Racagnol
Corrections in the nest multisynapses model code
1d06efd
@Racagnol
Clean up of the code
1f821ff
@apdavison
wip brian2 support for multisynapse models
3f64790
@apdavison
Merge pull request #5 from RCagnol/multisynapse3
97af91f 
Allowing the recording of conductances for multisynapse model in nest + implementation of 2-exponential synapse model
@apdavison
Merge branch 'multisynapse3' of github.com:apdavison/PyNN into multis…
d0df83b 
…ynapse3
@apdavison
Use "." rather than "_" to separate parts of names in hierarchical co…
631773c 
…mponents
@apdavison
Generalising the changes by @RCagnol to allow recording of synaptic c…
ef258f9 
…onductances from "multisynapse" models
@apdavison
Completed brian2 support for multisynapse models
6d770d7
@apdavison
added CurrExpPostSynapticResponse
d6b6448
@apdavison
Documented multi-synapse models
6a1c23d 
[skip ci]
@apdavison
Merge branch 'master' into multisynapse3
1f150d7 
# Conflicts:
#	pyNN/brian2/standardmodels/cells.py
#	pyNN/nest/recording.py
#	pyNN/neuron/recording.py
#	pyNN/neuron/standardmodels/cells.py
#	pyNN/standardmodels/__init__.py
@apdavison
Added test for "multi-synapse"/"composed" models
113f31f
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coveralls commented Feb 1, 2023 •
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Coverage Status

Coverage: 70.889% (+1.2%) from 69.727% when pulling 6631ce4 on apdavison:multisynapse3 into 2fc6b50 on NeuralEnsemble:master.

@apdavison apdavison added this to the 0.10.2 milestone Feb 1, 2023
@apdavison apdavison merged commit 1fe6204 into NeuralEnsemble:master Feb 1, 2023
@apdavison apdavison modified the milestones: 0.10.2, 0.11.0 Feb 5, 2023
@apdavison apdavison deleted the multisynapse3 branch April 30, 2024 10:41
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