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@MathOnco

IMO

Moffitt Cancer Center's Integrated Mathematical Oncology public facing repositories for published projects.

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  1. HAL HAL Public

    HAL (Hybrid Automata Library) is the one-stop shop for all of your hybrid modeling needs

    Java 38 13

  2. NeoPredPipe NeoPredPipe Public

    Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.

    Python 113 31

  3. EvoFreq EvoFreq Public

    Evolutionary frequency visualization tool of temporal data

    R 23 2

  4. Newsletter-Bibliography Newsletter-Bibliography Public

    LaTeX bibliography of the "This week in Math Onco" newsletter (https://mathematical-oncology.org/newsletter)

    TeX 2

Repositories

Showing 10 of 47 repositories
  • MathOnco-Bibliometrics Public Forked from fpradelli94/MathOnco-Bibliometrics

    Codebase and data for bibliometric analysis on Mathematical Research in Oncology

    MathOnco/MathOnco-Bibliometrics’s past year of commit activity
    Python 0 1 0 0 Updated Jan 10, 2026
  • ER-breast-cancer-evolutionary-double-bind Public

    Repository for code & data for "A novel combination therapy for ER+ breast cancer suppresses drug resistance via an evolutionary double-bind"

    MathOnco/ER-breast-cancer-evolutionary-double-bind’s past year of commit activity
    MATLAB 0 0 0 0 Updated Jan 7, 2026
  • Newsletter-Bibliography Public

    LaTeX bibliography of the "This week in Math Onco" newsletter (https://mathematical-oncology.org/newsletter)

    MathOnco/Newsletter-Bibliography’s past year of commit activity
    TeX 2 0 0 0 Updated Jan 1, 2026
  • Cell-State-Transitions-B-ALL Public

    Repository for the manuscript "Cell state transitions drive the evolution of disease progression in B-lymphoblastic leukemia"

    MathOnco/Cell-State-Transitions-B-ALL’s past year of commit activity
    MATLAB 0 0 0 0 Updated Dec 12, 2025
  • ECO_K Public

    This repository houses code that runs an inverse game theory algorithm to detect frequency dependent effects and model subpopulation evolution

    MathOnco/ECO_K’s past year of commit activity
    MATLAB 1 0 0 1 Updated Sep 29, 2025
  • RT-NK-evolutionary-double-bind Public

    This repository contains the code to reproduce the figures for the manuscript "Evolutionary double-bind treatment using radiotherapy and NK cell-based immunotherapy in prostate cancer," Luddy et. al. 2023

    MathOnco/RT-NK-evolutionary-double-bind’s past year of commit activity
    MATLAB 0 0 0 0 Updated Sep 15, 2025
  • NSCLC_Distinct_ecologies Public

    Code for paper 'Distinct tumor-immune ecologies in NSCLC patients predict progression and define a clinical biomarker of therapy response'

    MathOnco/NSCLC_Distinct_ecologies’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 13, 2025
  • IMAT Public

    IMO Methods & Tools Lecture Series

    MathOnco/IMAT’s past year of commit activity
    9 0 0 0 Updated Sep 9, 2025
  • valis Public

    Virtual Alignment of pathoLogy Image Series

    MathOnco/valis’s past year of commit activity
    Python 200 MIT 53 102 6 Updated Jun 25, 2025
  • CellCycle4DataIntegration Public

    Cell identity revealed by precise cell cycle state mapping links data modalities

    MathOnco/CellCycle4DataIntegration’s past year of commit activity
    XSLT 1 0 0 0 Updated Mar 17, 2025
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