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spatialLIBD
spatialLIBD PublicCode for the spatialLIBD R/Bioconductor package and shiny app
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HumanPilot
HumanPilot PublicSpatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
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spatialDLPFC
spatialDLPFC PublicspatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples
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10xPilot_snRNAseq-human
10xPilot_snRNAseq-human Public10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC
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LieberInstitute/fentanyl_rat_hb_amy’s past year of commit activity - SPEAQeasy Public
SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.
LieberInstitute/SPEAQeasy’s past year of commit activity - BiocMAP Public
Our typical analysis steps for WGBS data, starting from FASTQ reads and ending with the construction of bsseq objects. Created using nextflow
LieberInstitute/BiocMAP’s past year of commit activity - spatial_HYP Public
LieberInstitute/spatial_HYP’s past year of commit activity
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