Skip to content

Add tibial_cartilage_cropped test case in C++ and Python #80

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Draft
dzenanz wants to merge 5 commits into
base: main
Choose a base branch
from
Draft

Add tibial_cartilage_cropped test case in C++ and Python #80

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
5 commits
Select commit Hold shift + click to select a range
a195379
ENH: Change iso-surface value type from unsigned char to float
yehan0223 Dec 5, 2024
78c962a
ENH: Add an interesting test case with self-intersecting surface
dzenanz Dec 12, 2024
d34fb43
ENH: Add tibial_cartilage_cropped test case in C++ and Python
dzenanz Nov 29, 2024
a2a6fca
ENH: Add 0.1 iso-value for tibial_cartilage_cropped test case
dzenanz Dec 5, 2024
5f44436
ENH: Add failing test: Medical Segmentation Decathlon prostate_00
dzenanz Nov 24, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
39 changes: 39 additions & 0 deletions test/CMakeLists.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -316,6 +316,32 @@ add_test(
100 # Maximum number of steps
)

add_test(
NAME Cuberille_tibial_cartilage_cropped_0.1
COMMAND CuberilleTestDriver CuberilleTest01
${DATA_DIR}/tibial_cartilage_cropped.nrrd
${ITK_TEST_OUTPUT_DIR}/tibial_cartilage_cropped.vtk
0.1 # Iso-surface value
526 # Expected number of points
938 # Expected number of cells
1 # Generate triangle faces
1 # Project vertices to iso-surface
0.05 # Surface distance threshold
)

add_test(
NAME Cuberille_tibial_cartilage_cropped_0.5
COMMAND CuberilleTestDriver CuberilleTest01
${DATA_DIR}/tibial_cartilage_cropped.nrrd
${ITK_TEST_OUTPUT_DIR}/tibial_cartilage_cropped.vtk
0.5 # Iso-surface value
0 # Expected number of points
0 # Expected number of cells
1 # Generate triangle faces
1 # Project vertices to iso-surface
0.05 # Surface distance threshold
)

#add_test(
# Cuberille_Engine_01
# CuberilleTest01
Expand Down Expand Up @@ -351,6 +377,19 @@ add_test(
# 25 # Maximum number of steps
#)

add_test(
NAME TC_prob_float_9021791_96M_right_cropped
COMMAND CuberilleTestDriver CuberilleTest01
${DATA_DIR}/TC_prob_float_9021791_96M_right_cropped.nrrd
${ITK_TEST_OUTPUT_DIR}/TC_prob_float_9021791_96M_right_cropped.vtk
0.5 # Iso-surface value
132 # Expected number of points
222 # Expected number of cells
1 # Generate triangle faces
1 # Project vertices to iso-surface
0.05 # Surface distance threshold
)

itk_add_test(NAME CuberilleTestDirectionMatrix
COMMAND ${itk-module}TestDriver CuberilleTest02 )

Expand Down
4 changes: 2 additions & 2 deletions test/CuberilleTest01.cxx
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -66,7 +66,7 @@ CuberilleTest01Helper(int argc, char * argv[])
int arg = 1;
char * filenameInputImage = argv[arg++];
char * filenameOutputMesh = argv[arg++];
PixelType isoSurfaceValue = atoi(argv[arg++]);
PixelType isoSurfaceValue = atof(argv[arg++]);
unsigned int expectedNumberOfPoints = atoi(argv[arg++]);
unsigned int expectedNumberOfCells = atoi(argv[arg++]);

Expand Down Expand Up @@ -255,7 +255,7 @@ CuberilleTest01(int argc, char * argv[])
{

constexpr unsigned int Dimension = 3;
using PixelType = unsigned char;
using PixelType = float;
using CoordinateType = double;
using QEMeshType = itk::QuadEdgeMesh<CoordinateType, Dimension>;
using MeshType = itk::Mesh<CoordinateType, Dimension>;
Expand Down
Binary file added test/Input/TC_prob_float_9021791_96M_right_cropped.nrrd
View file
Open in desktop
Binary file not shown.
Binary file added test/Input/prostate_00.nii.gz
View file
Open in desktop
Binary file not shown.
Binary file added test/Input/tibial_cartilage_cropped.nrrd
View file
Open in desktop
Binary file not shown.
16 changes: 16 additions & 0 deletions wrapping/test/CMakeLists.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,6 +8,14 @@ set(test_input_dir ${CMAKE_CURRENT_SOURCE_DIR}/../../test/Input)

list(FIND ITK_WRAP_IMAGE_DIMS 3 wrap_3_index)
if(wrap_3_index GREATER -1)
itk_python_add_test(NAME Cuberille_tibial_cartilage_cropped_python
TEST_DRIVER_ARGS
COMMAND cuberille_test.py
DATA{${test_input_dir}/tibial_cartilage_cropped.nrrd}
${ITK_TEST_OUTPUT_DIR}/tibial_cartilage_cropped.vtk
0.5 # iso-surface value
)

itk_python_add_test(NAME Cuberille_blob0_python
TEST_DRIVER_ARGS
COMMAND cuberille_test.py
Expand All @@ -23,6 +31,14 @@ if(wrap_3_index GREATER -1)
100 # iso-surface value
)

itk_python_add_test(NAME Cuberille_prostate_00_python
TEST_DRIVER_ARGS
COMMAND cuberille_test.py
DATA{${test_input_dir}/prostate_00.nii.gz}
${ITK_TEST_OUTPUT_DIR}/prostate_00.vtk
1 # iso-surface value
)

itk_python_add_test(NAME Cuberille_hydrogenAtom_35_python
TEST_DRIVER_ARGS
COMMAND cuberille_test.py
Expand Down
Loading