TDF2OBO

Table of Contents

• About
• Installation
• Usage

About

TDF2OBO is a transformation tool taking as input a Trait Definition File as proposed by MIAPPE [1] and converting it to an ontology formatted in obo [2].

Installation

To install TDF2OBO locally using Poetry [3]:

1. Clone the repository:

   git clone https://github.com/IPK-BIT/tdf2obo.git
   cd tdf2obo

2. Install dependencies:

   poetry install

You can now use tdf2obo as described below.

Usage

To convert a Trait Definition File (TDF) to OBO format, run the following command:

tdf2obo --file <input_tdf_file> --output <output_obo_file>

Parameters:

• --file (required): Path to the input Trait Definition File (TDF). Supports: .tsv, .csv
• --output (optional): Path where the generated OBO file will be saved. Default: - (console)

Example:

tdf2obo --file examples/tdf.tsv --output trait-definition.obo