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fix cell clustering bug #499

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fix cell clustering bug #499

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4 changes: 2 additions & 2 deletions R/bambu.R
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Original file line number Diff line number Diff line change
Expand Up @@ -266,7 +266,7 @@ bambu <- function(reads, annotations = NULL, genome = NULL, NDR = NULL,
#load in the barcode clustering from file if provided
iter <- seq_len(ncol(metadata(quantData_i)$countMatrix)) # iter is integer
if(!is.null(clusters)){
if(class(clusters[[i]])!="CompressedCharacterList"){ # !is.list(clusters) is FALSE for CompressedCharacterList
if(class(clusters)!="CompressedCharacterList"&(!is.list(clusters))){
clusterMaps <- NULL
for(j in seq_along(metadata(quantData_i)$sampleNames)){ #load in a file per sample name provided
clusterMap <- fread(clusters[[j]], header = FALSE,
Expand All @@ -287,7 +287,7 @@ bambu <- function(reads, annotations = NULL, genome = NULL, NDR = NULL,
if(length(quantData)>1){
iter <- clusters[[i]] #lowMemory mode
}else{
iter <- clusters#do.call(c,clusters)
iter <- do.call(c,clusters) #clusters direct assignment in Multiplex_Major_Patch is throwing error
}
}
}
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