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Pull requests: Ensembl/ensembl-variation

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Pull requests list

Fix stop_retained incorrectly called for stop_gained/stop_lost (Issue ensembl-vep#1710)
#1202 opened Jan 29, 2026 by palakpsheth Loading…
6 tasks done
Pig frequency from EVA study PRJEB93975
#1201 opened Jan 13, 2026 by nakib103 Loading…
@jamie-m-a
Add 'only run new IDs' behaviour
#1200 opened Jan 12, 2026 by ainefairbrother • Draft
Copyright Github action
#1199 opened Jan 6, 2026 by likhitha-surapaneni Loading…
@ainefairbrother
SV multi-allelic - create multiple overlap alleles
#1190 opened Oct 14, 2025 by nakib103 Loading…
@likhitha-surapaneni
4
CADD for turkey
#1189 opened Oct 8, 2025 by likhitha-surapaneni Loading…
@likhitha-surapaneni
1
Add mavedb logging, DC and small fixes
#1188 opened Oct 3, 2025 by ainefairbrother Loading…
Update script spliceai_annotation_file.py e116
#1186 opened Oct 2, 2025 by dglemos Loading…
@ainefairbrother
3
Update predicates to handle special cases e116
#1184 opened Sep 25, 2025 by nakib103 Loading…
@likhitha-surapaneni
Add improved liftover pipeline (using bcftools +liftover) on hold
#1165 opened May 29, 2025 by ainefairbrother Loading…
Nextflow ProteinFunction: support for SQLite db
#1152 opened Feb 11, 2025 by nakib103 Loading…
@likhitha-surapaneni
2
ENSVAR-6654 & ENSVAR-6381 e116
#1149 opened Jan 31, 2025 by olaaustine Loading…
@jamie-m-a
4
Github actions creation to update copyright
#1145 opened Jan 15, 2025 by olaaustine Loading…
@likhitha-surapaneni
4
Web VEP: fix incorrect variant end on hold
#1059 opened Nov 30, 2023 by nuno-agostinho • Draft
@nakib103
5
Prevent start_lost check when shifting out of translateable region bug
#616 opened Jul 6, 2020 by aparton Loading…
@sarahhunt @likhitha-surapaneni
2
Return subseq from correct side of seq when on reverse strand using a… on hold
#454 opened Sep 13, 2019 by aparton Loading…
@nakib103
1
ProTip! What’s not been updated in a month: updated:<2025-12-31.