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Provide precomputed skani sketches for GTDB representative genomes

Status: Open.

#686 In Ecogenomics/GTDBTk;

· fplazaonate opened on Jan 16, 2026

Create GTDB-tk apptainer

Status: Open.

#685 In Ecogenomics/GTDBTk;

· natchaphon602 opened on Jan 12, 2026

GTDB-tk crashes when run twice with the same output directory

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

next versionUpcoming feature/fix in staging branch.Upcoming feature/fix in staging branch.

Status: Open.

#684 In Ecogenomics/GTDBTk;

· fplazaonate opened on Jan 9, 2026

New 2.6.1 version AttributeError: 'Parallel' object has no attribute '__process_manager'

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#683 In Ecogenomics/GTDBTk;

· KennLu2914 opened on Dec 21, 2025

ERROR: skani returned a non-zero exit code./ERROR: Controlled exit resulting from an unrecoverable error or warning.

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#675 In Ecogenomics/GTDBTk;

· mrraoyz opened on Nov 23, 2025

GTDB won't stop running and produce results

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#628 In Ecogenomics/GTDBTk;

· lyisrae1 opened on Mar 28, 2025

Total genome counter in log is off (warning message)

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#585 In Ecogenomics/GTDBTk;

· GabeAl opened on Apr 26, 2024

Error running Prodigal on genome

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#566 In Ecogenomics/GTDBTk;

· fhdbqr opened on Dec 20, 2023

Use type strains for GTDB to NCBI taxonomy translation

Status: Open.

#552 In Ecogenomics/GTDBTk;

· fplazaonate opened on Oct 16, 2023

Slow download speed v214

Status: Open.

#522 In Ecogenomics/GTDBTk;

· kafker opened on Jun 2, 2023

Use Pyrodigal as Prodigal alternative

enhancementProposed feature or change to GTDB-Tk.Proposed feature or change to GTDB-Tk.

Status: Open.

#456 In Ecogenomics/GTDBTk;

· lfenske-93 opened on Dec 5, 2022

Write debug file on exception

enhancementProposed feature or change to GTDB-Tk.Proposed feature or change to GTDB-Tk.

Status: Open.

#432 In Ecogenomics/GTDBTk;

· aaronmussig opened on Sep 11, 2022