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#161

· kelly-sovacool opened

on Dec 23, 2025

Plots are written to PNG but do not appear in RStudio Plots pane (<code>clean_raw_counts</code>, <code>filter_counts</code>, etc.)

#157

· TJoshMeyer opened

on Dec 17, 2025

DE workflow tests and vignettes fail: count matrix first column is character (edgeR expects numeric)

#156

· TJoshMeyer opened

on Dec 17, 2025

clean_raw_counts() can leave duplicated gene IDs unless gene_name_column_to_use_for_collapsing_duplicates is set carefully

#155

· TJoshMeyer opened

on Dec 17, 2025

batch_correct_counts() uses batch_column instead of batch_colname

#154

· TJoshMeyer opened

on Dec 17, 2025

Add unit tests for CLI with Galaxy

#152

· kelly-sovacool opened

on Dec 12, 2025

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fix filter_counts() parameter parsing with Galaxy

#151

· kelly-sovacool opened

on Dec 12, 2025

·

batch_correct_counts() cli error

#150

· kelly-sovacool opened

on Dec 9, 2025

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Fill out NIDAP-based JSON templates for Galaxy

#148

· kelly-sovacool opened

on Nov 21, 2025

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Remove dependency on EnhancedVolcano

#142

· kelly-sovacool opened

on Oct 20, 2025

FAIR Compliance Dashboard

#139

· codefair-io opened

on Oct 17, 2025

support ggplot2 v4.0.0

#137

· kelly-sovacool opened

on Oct 3, 2025