Dockers2 0.1.2

• Create new containers for RENEE:
  • arriba
  • bbtools
  • cutadapt
  • fastqc
  • fastqscreen
  • fastqvalidator
  • kraken
  • preseq
  • qualimap
  • rsem
  • rseqc
  • ucsc
• Update scripts/tool_version_commands.json to specify different version commands for each tool.
• Add helper script for combining PRs: scripts/combine_prs.sh

v0.1.1

What's Changed

• new ubuntu 22.04 base image

Full Changelog: v0.1.0...v0.1.1

Dockers2 0.1.0

This is the first release of the new and improved dockers repo! 🎉

For the legacy repo, see CCBR/Dockers.

features

• New github actions workflows to automatically build and push containers to dockerhub.
• New base containers:
  • ccbr_ubuntu_20.02:v8
  • ccbr_ubuntu_22.04:v3
• New cutadapt containers:
  • ccbr_cutadapt_1.18:v2
  • ccbr_cutadaptt_4.9:v1