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@Bhattacharya-Lab

Bhattacharya Lab

Debswapna Bhattacharya's Research Group in the CS Department at Virginia Tech

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  1. PolyFold PolyFold Public

    An interactive visual simulator for distance-based protein folding

    Java 24 5

  2. EquiPNAS EquiPNAS Public

    pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction

    Python 22 2

  3. ProRNA3D-single ProRNA3D-single Public

    Single-sequence protein-RNA complex structure prediction with biological language models

    Python 14

  4. CASP15 CASP15 Public

    CASP15 performance benchmarking of the state-of-the-art protein structure prediction methods

    12

  5. EquiPPIS EquiPPIS Public

    E(3) equivariant graph neural network for PPI site prediction

    Python 10 2

  6. RNAbpFlow RNAbpFlow Public

    Base pair-augmented SE(3)-flow matching for conditional RNA 3D structure generation

    Python 10

Repositories

Showing 10 of 17 repositories
  • ORIGAMI Public

    ORIentation-aware Gnn for Assessing Multimeric Interfaces

    Bhattacharya-Lab/ORIGAMI’s past year of commit activity
    Python 0 0 0 0 Updated Nov 20, 2025
  • PARSEbp Public

    Pairwise Agreement-based RNA Scoring with Emphasis on Base Pairings

    Bhattacharya-Lab/PARSEbp’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Oct 15, 2025
  • ProRNA3D-single Public

    Single-sequence protein-RNA complex structure prediction with biological language models

    Bhattacharya-Lab/ProRNA3D-single’s past year of commit activity
    Python 14 GPL-3.0 0 1 0 Updated Sep 23, 2025
  • RNAbpFlow Public

    Base pair-augmented SE(3)-flow matching for conditional RNA 3D structure generation

    Bhattacharya-Lab/RNAbpFlow’s past year of commit activity
    Python 10 GPL-3.0 0 0 0 Updated Sep 14, 2025
  • PackBench Public
    Bhattacharya-Lab/PackBench’s past year of commit activity
    Python 1 GPL-3.0 0 2 0 Updated Jul 2, 2025
  • lociPARSE Public

    locality-aware invariant Point Attention-based RNA ScorEr

    Bhattacharya-Lab/lociPARSE’s past year of commit activity
    Python 6 GPL-3.0 0 0 0 Updated Nov 11, 2024
  • RNAmark Public

    The landscape of RNA 3D structure modeling with transformer networks

    Bhattacharya-Lab/RNAmark’s past year of commit activity
    Shell 1 GPL-3.0 0 0 0 Updated Jul 21, 2024
  • EquiPNAS Public

    pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction

    Bhattacharya-Lab/EquiPNAS’s past year of commit activity
    Python 22 GPL-3.0 2 3 0 Updated Apr 24, 2024
  • CASP15 Public

    CASP15 performance benchmarking of the state-of-the-art protein structure prediction methods

    Bhattacharya-Lab/CASP15’s past year of commit activity
    12 GPL-3.0 0 2 0 Updated Dec 13, 2023
  • EquiPPIS Public

    E(3) equivariant graph neural network for PPI site prediction

    Bhattacharya-Lab/EquiPPIS’s past year of commit activity
    Python 10 GPL-3.0 2 1 0 Updated Sep 18, 2023

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