CHEETAH

Custom Python code for CHEETAH.
This repository contains two parts:

1. DNA Tape analysis
   Original analysis code for SARS-CoV-2 transcript recording using CHEETAH and DNA Tape.

2. euRptr / peuRptr designer
   A tool for designing recording constructs (Cas9, ABE, PE) and assembling peuRptrs.

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Repository Structure

CHEETAH/
├── analysis/    # Typewriter (DNA Tape) analysis code
└── design/      # euRptr/peuRptr design code

• analysis/ — code for transcript recording analysis
• design/ — code for candidate euRptr design and peuRptr assembly

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Quick Start

Clone the repository:

git clone https://github.com/BaeLab/CHEETAH.git
cd CHEETAH

Navigate to each module for usage:

cd analysis     # DNA Tape analysis
cd design       # euRptr design

Each folder contains its own README.md with details.

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License

This project is licensed under the CC BY-NC 4.0 License.