Microbial richness and air chemistry in aerosols above the PBL confirm 2,000-km long-distance transport of potential human pathogens

This repository holds the data and code for the analysis of the manuscript "Microbial richness and air chemistry in aerosols above the PBL confirm 2000-km long-distance transport of potential human pathogens", now published in PNAS.

To reproduce the environment used in this analysis, you can use the environment.yml file to create a conda environment with all the necessary packages. To do so, run the following command:

conda env create -f environment.yml

The different data sources can be found in the data folder. The code and script used to generate the analysis and figures can be found in the different .ipynb files in the project directory.

The main notebook is project/microbial_diversity_analysis.ipynb, with the code generating most of the analysis and figures of the manuscript. It is too large to be rendered on GitHub so either clone the repo and explore it locally or go to the Quarto render of the projects's notebooks hosted in the Github Pages of this repository here.