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1. codialab/panacus codialab/panacus Public

   Panacus is a tool for computing statistics for GFA-formatted pangenome graphs

   Rust 116 10

2. gi-bielefeld/mice gi-bielefeld/mice Public

   Markers Inferred by Compacting Elements (mice). Synteny blocks from pangenomes.

   Rust 5

3. gi-bielefeld/pangrowth gi-bielefeld/pangrowth Public

   Pangenome openness from k-mers or genes

   C 11

4. rnd_dbseq rnd_dbseq Public

   Generate any random de Bruijn sequence fast and efficiently

   C++ 5

5. Pangenome-Openness Pangenome-Openness Public

   Repository dedicated to the experiment section of the paper: Revisiting pangenome openness with k-mers. PCJ Math & Comp Biol. (2024).

   R 2

6. gfa2gff gfa2gff Public

   Compacted deBruijn graph in GFA to GFF format.

   C++ 3