Germline-Tumor workflows for WES data analysis by Genetic Predisposition to Gastrointestinal Cancer Group (according to Knudson's two-hit hypothesis) used in recent publication Díaz-Gay et al., Cancers 2019:
- Germline SNV vs Somatic SNV
- Germline SNV vs Somatic LOH by ALFRED method (Park et al., Nature Communications 2018)