Adding Linux-aarch64 support for conda and wheels

.github/workflows/build_linux.yml

@@ -2,69 +2,69 @@ name: CMake on linux
 on:
   push:
     branches:
-    - master
-    - release-*
-    - v*
+      - master
+      - release-*
+      - v*
   pull_request:
     branches:
-    - master
+      - master
 
 jobs:
   Ubuntu_Latest_Apt:
     runs-on: ubuntu-latest
     strategy:
       matrix:
         build_type:
-        - Debug
-        - Release
-        - RelNoOpenMP
-        - RelWithDebInfo
+          - Debug
+          - Release
+          - RelNoOpenMP
+          - RelWithDebInfo
     steps:
-    - name: checkout
-      uses: actions/checkout@v4
-      with:
-        fetch-depth: 0
+      - name: checkout
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
 
-    - name: install dependencies
-      run: |-
-        sudo apt-get update
-        sudo apt-get install -y cmake wget ninja-build libblas-dev liblapack-dev liblapacke-dev libboost-all-dev libopenmpi-dev libeigen3-dev libhdf5-dev
-        sudo apt-get clean all
+      - name: install dependencies
+        run: |-
+          sudo apt-get update
+          sudo apt-get install -y cmake wget ninja-build libblas-dev liblapack-dev liblapacke-dev libboost-all-dev libopenmpi-dev libeigen3-dev libhdf5-dev
+          sudo apt-get clean all
 
-    - name: Install Catch v3
-      run: |
-        cd /tmp
-        wget -O Catch2.tar.gz https://github.com/catchorg/Catch2/archive/refs/tags/v3.6.0.tar.gz
-        tar xzf Catch2.tar.gz
-        rm Catch2.tar.gz
-        cd Catch2*
-        cmake -S . -B build  -DBUILD_TESTING=OFF
-        cmake --build build
-        sudo cmake --install build
+      - name: Install Catch v3
+        run: |
+          cd /tmp
+          wget -O Catch2.tar.gz https://github.com/catchorg/Catch2/archive/refs/tags/v3.6.0.tar.gz
+          tar xzf Catch2.tar.gz
+          rm Catch2.tar.gz
+          cd Catch2*
+          cmake -S . -B build  -DBUILD_TESTING=OFF
+          cmake --build build
+          sudo cmake --install build
 
-    - name: Install HighFive
-      run: |
-        cd /tmp
-        wget -O HighFive.tar.gz https://github.com/BlueBrain/HighFive/archive/v2.2.2.tar.gz
-        tar xzf HighFive.tar.gz
-        rm HighFive.tar.gz
-        cd HighFive*
-        cmake -DHIGHFIVE_EXAMPLES=OFF -DHIGHFIVE_USE_BOOST=OFF -DHIGHFIVE_UNIT_TESTS=OFF -S . -B build
-        cmake --build build
-        sudo cmake --install build
+      - name: Install HighFive
+        run: |
+          cd /tmp
+          wget -O HighFive.tar.gz https://github.com/BlueBrain/HighFive/archive/v2.10.1.tar.gz
+          tar xzf HighFive.tar.gz
+          rm HighFive.tar.gz
+          cd HighFive*
+          cmake -DHIGHFIVE_EXAMPLES=OFF -DHIGHFIVE_USE_BOOST=OFF -DHIGHFIVE_UNIT_TESTS=OFF -S . -B build
+          cmake --build build
+          sudo cmake --install build
 
-    - name: Run CMake
-      run: |-
-         cmake -S .  -B build.${{ matrix.build_type }} -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} -DENABLE_PYTHON=OFF
+      - name: Run CMake
+        run: |-
+          cmake -S .  -B build.${{ matrix.build_type }} -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} -DENABLE_PYTHON=OFF
 
-    - name: Build
-      run: |-
-        cmake --build build.${{ matrix.build_type }}
+      - name: Build
+        run: |-
+          cmake --build build.${{ matrix.build_type }}
 
-    - name: Install
-      run: |-
-        sudo cmake --install build.${{ matrix.build_type }}
+      - name: Install
+        run: |-
+          sudo cmake --install build.${{ matrix.build_type }}
 
-    - name: Run tests
-      run: |-
-        smurff --bist
+      - name: Run tests
+        run: |-
+          smurff --bist

.github/workflows/conda.yml

@@ -11,16 +11,33 @@ on:
 
 jobs:
   conda-build:
-    name: Build Conda Package on ${{ matrix.os }} for Python ${{ matrix.python }}
+    name: Build Conda Package on ${{ matrix.os }} for Python ${{ matrix.pyver }}
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-          os: [ubuntu-latest, windows-latest, macos-13, macos-14]
-          python: [ "3.9", "3.10", "3.11", "3.12", "3.13" ]
+        pyver: ["3.9", "3.10", "3.11", "3.12", "3.13", "3.14"]
+        include:
+          - os: windows-latest
+            cibw_archs: "native"
+          - os: macos-13
+            cibw_archs: "native"
+          - os: macos-14
+            cibw_archs: "native"
+          - os: ubuntu-latest
+            cibw_archs: "native"
+          - os: ubuntu-latest
+            cibw_archs: "aarch64"
+
     defaults:
       run:
         shell: bash -el {0}
+
     steps:
+      - name: Set up QEMU
+        if: matrix.cibw_archs == 'aarch64'
+        uses: docker/setup-qemu-action@v2
+        with:
+          platforms: arm64
       - uses: actions/checkout@v4
         with:
           fetch-depth: 0
@@ -31,16 +48,16 @@ jobs:
           python-version: 3.11
           environment-file: conda-recipes/devtools.yml
           show-channel-urls: true
-          conda-remove-defaults: 'true'
+          conda-remove-defaults: "true"
       - name: Build conda packages
         run: |
-          conda build --python ${{ matrix.python }}  --output-folder ../conda_packages smurff
+          conda build --python ${{ matrix.pyver }}  --output-folder ../conda_packages smurff
         working-directory: conda-recipes
       - name: Upload artifact
         uses: actions/upload-artifact@v4
         with:
-           name: conda-${{ matrix.os }}-${{ matrix.python }}
-           path: conda_packages/*
+          name: conda-${{ matrix.os }}-${{ matrix.pyver }}
+          path: conda_packages/*
 
   merge:
     name: Merge all Conda artifacts
@@ -50,4 +67,4 @@ jobs:
       - name: Merge Artifacts
         uses: actions/upload-artifact/merge@v4
         with:
-          name: all-conda-packages
+          name: all-conda-packages

.github/workflows/wheels.yml

@@ -11,38 +11,37 @@ on:
 
 jobs:
   build_wheels:
-    name: wheel ${{ matrix.pyver }}-${{ matrix.os }}
+    name: Build wheel ${{ matrix.pyver }}-${{ matrix.os }}
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-          os: [ubuntu-latest, windows-latest, macos-13, macos-14]
-          pyver: [cp39, cp310, cp311, cp312, cp313]
+        os: [ubuntu-latest, windows-latest, macos-14-large, macos-15-intel]
+        pyver: [cp39, cp310, cp311, cp312, cp313]
 
     steps:
       - uses: actions/checkout@v4
         with:
-          submodules: 'true'
+          submodules: "true"
           fetch-depth: 0
 
       # Used to host cibuildwheel
       - uses: actions/setup-python@v5
         with:
-          python-version: '3.x'
+          python-version: "3.x"
 
       - name: Install cibuildwheel
         run: python -m pip install cibuildwheel
 
       - name: Build wheels
         env:
-          CIBW_BUILD: ${{matrix.pyver}}-*
+          CIBW_BUILD: ${{ matrix.pyver }}-*
         run: python -m cibuildwheel --output-dir wheelhouse
 
       - uses: actions/upload-artifact@v4
         with:
           name: cibw-wheels-${{ matrix.os }}-${{ matrix.pyver }}
           path: ./wheelhouse/*.whl
 
-
   merge:
     name: merge all wheel artifacts
     runs-on: ubuntu-latest
@@ -51,4 +50,4 @@ jobs:
       - name: Merge Artifacts
         uses: actions/upload-artifact/merge@v4
         with:
-          name: all-wheels
+          name: all-wheels

ci/docker/Dockerfile.alpine

@@ -3,18 +3,18 @@ FROM alpine:3.19
 RUN apk add \
         binutils gcc g++ gfortran \
         cmake ninja make \
-	wget curl util-linux tar \
+        wget curl util-linux tar \
         git \
         eigen-dev openblas-dev hdf5-dev boost-dev catch2-3 \
         py3-pybind11-dev python3-dev py3-pip py3-pytest py3-parameterized py3-pytest-xdist
 
 #install HighFive
-RUN wget -O HighFive.tar.gz https://github.com/BlueBrain/HighFive/archive/v2.2.2.tar.gz && \
-    tar xzf HighFive.tar.gz && \
-    rm HighFive.tar.gz && \
-    cd HighFive* && \
-    cmake -S . -B build -GNinja .. -DHIGHFIVE_USE_BOOST=OFF && \
-    cmake --build build && \
-    cmake --install build && \
-    cd ../.. && \
-    rm -r HighFive*
+RUN wget -O HighFive.tar.gz https://github.com/BlueBrain/HighFive/archive/v2.10.1.tar.gz && \
+        tar xzf HighFive.tar.gz && \
+        rm HighFive.tar.gz && \
+        cd HighFive* && \
+        cmake -S . -B build -GNinja .. -DHIGHFIVE_USE_BOOST=OFF && \
+        cmake --build build && \
+        cmake --install build && \
+        cd ../.. && \
+        rm -r HighFive*

ci/docker/Dockerfile.manylinux

@@ -4,14 +4,14 @@ RUN yum -y install wget eigen3-devel openblas-devel hdf5-devel && \
    yum clean all
 
 #install HighFive
-RUN wget -O HighFive.tar.gz https://github.com/BlueBrain/HighFive/archive/v2.2.2.tar.gz && \
-    tar xzf HighFive.tar.gz && \
-    rm HighFive.tar.gz && \
-    cd HighFive* && \
-    mkdir build && \
-    cd build && \
-    cmake .. -DHIGHFIVE_USE_BOOST=OFF && \
-    make -j2 && \
-    make install && \
-    cd ../.. && \
-    rm -r HighFive*
+RUN wget -O HighFive.tar.gz https://github.com/BlueBrain/HighFive/archive/v2.10.1.tar.gz && \
+   tar xzf HighFive.tar.gz && \
+   rm HighFive.tar.gz && \
+   cd HighFive* && \
+   mkdir build && \
+   cd build && \
+   cmake .. -DHIGHFIVE_USE_BOOST=OFF && \
+   make -j2 && \
+   make install && \
+   cd ../.. && \
+   rm -r HighFive*

ci/docker/Dockerfile.musllinux

@@ -3,7 +3,7 @@ FROM quay.io/pypa/musllinux_1_2_x86_64
 RUN apk add wget eigen-dev openblas-dev hdf5-dev
 
 #install HighFive
-RUN wget -O HighFive.tar.gz https://github.com/BlueBrain/HighFive/archive/v2.2.2.tar.gz && \
+RUN wget -O HighFive.tar.gz https://github.com/BlueBrain/HighFive/archive/v2.10.1.tar.gz && \
     tar xzf HighFive.tar.gz && \
     rm HighFive.tar.gz && \
     cd HighFive* && \

ci/docker/Dockerfile.ubuntu

@@ -1,47 +1,47 @@
 FROM ubuntu:22.04
 
 RUN apt-get update && \
-   DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \
-       build-essential \
-       cmake \
-       git g++ python3 \
-       libblas-dev \
-       liblapack-dev \
-       liblapacke-dev \
-       libopenmpi-dev \
-       openmpi-bin \
-       libeigen3-dev \
-       libboost-all-dev \
-       ca-certificates \
-       libhdf5-dev \
-       gdb vim wget\
-       libhdf5-dev \
-       python3-pip \
-       python3-numpy python3-pybind11 python3-setuptools \
-       python3-scipy python3-pandas \
-       python3-joblib python3-sklearn \
-       python3-h5py \
-       python3-pytest \
-       python3-parameterized \
-       python3-pytest-xdist \
+    DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \
+    build-essential \
+    cmake \
+    git g++ python3 \
+    libblas-dev \
+    liblapack-dev \
+    liblapacke-dev \
+    libopenmpi-dev \
+    openmpi-bin \
+    libeigen3-dev \
+    libboost-all-dev \
+    ca-certificates \
+    libhdf5-dev \
+    gdb vim wget\
+    libhdf5-dev \
+    python3-pip \
+    python3-numpy python3-pybind11 python3-setuptools \
+    python3-scipy python3-pandas \
+    python3-joblib python3-sklearn \
+    python3-h5py \
+    python3-pytest \
+    python3-parameterized \
+    python3-pytest-xdist \
     && rm -rf /var/lib/apt/lists/*
 
 
 # Install Catch v3
 RUN cd /tmp && \
-        wget -O Catch2.tar.gz https://github.com/catchorg/Catch2/archive/refs/tags/v3.6.0.tar.gz && \
-        tar xzf Catch2.tar.gz && \
-        rm Catch2.tar.gz && \
-        cd Catch2* && \
-        cmake -S . -B build  -DBUILD_TESTING=OFF && \
-        cmake --build build && \
-        cmake --install build && \
-        cd .. && \
-        rm -r Catch*
+    wget -O Catch2.tar.gz https://github.com/catchorg/Catch2/archive/refs/tags/v3.6.0.tar.gz && \
+    tar xzf Catch2.tar.gz && \
+    rm Catch2.tar.gz && \
+    cd Catch2* && \
+    cmake -S . -B build  -DBUILD_TESTING=OFF && \
+    cmake --build build && \
+    cmake --install build && \
+    cd .. && \
+    rm -r Catch*
 
 #install HighFive
 RUN cd /tmp && \
-    wget -O HighFive.tar.gz https://github.com/BlueBrain/HighFive/archive/v2.2.2.tar.gz && \
+    wget -O HighFive.tar.gz https://github.com/BlueBrain/HighFive/archive/v2.10.1.tar.gz && \
     tar xzf HighFive.tar.gz && \
     rm HighFive.tar.gz && \
     cd HighFive* && \

ci/highfive.rb

@@ -4,7 +4,7 @@
 class Highfive < Formula
   desc "HighFive - Header-only C++ HDF5 interface"
   homepage "https://bluebrain.github.io/HighFive/"
-  url "https://github.com/BlueBrain/HighFive/archive/v2.2.2.tar.gz"
+  url "https://github.com/BlueBrain/HighFive/archive/v2.10.1.tar.gz"
   sha256 "5bfb356705c6feb9d46a0507573028b289083ec4b4607a6f36187cb916f085a7"
 
   depends_on "cmake" => :build

cmake/DependenciesConfig.cmake

@@ -116,7 +116,7 @@ endmacro(configure_highfive)
 macro(configure_boost)
   message ("Dependency check for boost...")
   if(${ENABLE_BOOST})
-      FIND_PACKAGE(Boost COMPONENTS system program_options filesystem REQUIRED)
+      FIND_PACKAGE(Boost COMPONENTS program_options filesystem REQUIRED)
 
       message("-- Found Boost_VERSION: ${Boost_VERSION}")
       message("-- Found Boost_INCLUDE_DIRS: ${Boost_INCLUDE_DIRS}")