Update pre-commit

Author: benjeffery

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.6.0
+    rev: v5.0.0
     hooks:
       - id: check-merge-conflict
       - id: debug-statements
@@ -18,29 +18,29 @@ repos:
       exclude: dev-tools|examples
       verbose: true
   - repo: https://github.com/asottile/reorder_python_imports
-    rev: v3.12.0
+    rev: v3.14.0
     hooks:
       - id: reorder-python-imports
         args: [--application-directories=python,
                --unclassifiable-application-module=_tskit]
   - repo: https://github.com/asottile/pyupgrade
-    rev: v3.15.2
+    rev: v3.19.1
     hooks:
       - id: pyupgrade
         args: [--py3-plus, --py38-plus]
   - repo: https://github.com/psf/black
-    rev: 24.4.2
+    rev: 25.1.0
     hooks:
       - id: black
         language_version: python3
   - repo: https://github.com/pycqa/flake8
-    rev: 7.0.0
+    rev: 7.1.2
     hooks:
       - id: flake8
         args: [--config=python/.flake8]
         additional_dependencies: ["flake8-bugbear==23.9.16", "flake8-builtins==2.1.0"]
   - repo: https://github.com/asottile/blacken-docs
-    rev: 1.16.0
+    rev: 1.19.1
     hooks:
       - id: blacken-docs
         args: [--skip-errors]

python/tests/test_genotypes.py

@@ -2016,8 +2016,8 @@ def test_reference_sequence(self, ts):
         ),
         # Case 10: Lists contain unicode characters.
         (
-            ["\u1F1E8", "\u1F1EC"],
-            ["\u1F1EC", "\u1F1E8", "\u1F1E6", "\u1F1F3"],
+            ["\u1f1e8", "\u1f1eC"],
+            ["\u1f1eC", "\u1f1e8", "\u1f1e6", "\u1f1f3"],
             np.array([1, 0], dtype="uint32"),
         ),
     ],

python/tskit/drawing.py

@@ -58,6 +58,7 @@
 @dataclass
 class Offsets:
     "Used when x_lim set, and displayed ts has been cut down by keep_intervals"
+
     tree: int = 0
     site: int = 0
     mutation: int = 0
@@ -66,6 +67,7 @@ class Offsets:
 @dataclass(frozen=True)
 class Timescaling:
     "Class used to transform the time axis"
+
     max_time: float
     min_time: float
     plot_min: float