Add a simple regression for Foldseek search

Author: RuoshiZhang

util/run_regression.sh

@@ -13,7 +13,15 @@ mkdir -p "${BASEDIR}"
 "${SPACEDUST}" createsetdb ${DATA}/*.faa "${BASEDIR}/genome" "${BASEDIR}/tmp"
 "${SPACEDUST}" clustersearch "${BASEDIR}/genome" "${BASEDIR}/genome" "${BASEDIR}/result.tsv" "${BASEDIR}/tmp" --filter-self-match
 
+#foldseek related regression
+"${SPACEDUST}" createsetdb ${DATA}/foldseek_testdb/foldseek_test "${BASEDIR}/foldseek_testdb" "${BASEDIR}/tmp"
+"${SPACEDUST}" clustersearch "${BASEDIR}/foldseek_testdb" "${BASEDIR}/foldseek_testdb" "${BASEDIR}/result_foldseek.tsv" "${BASEDIR}/tmp" --filter-self-match --search-mode 2 
+
 awk '/^>/ { cnt++; } END { if (cnt != 308) exit 1; }' "${BASEDIR}/result.tsv" \
   || fail "Check 1 failed. Expected: 308 Actual: $(awk '/^>/ { cnt++; } END { print cnt; }' "${BASEDIR}/result.tsv")"
 awk '/^#/ { if ($4 < 1E-20) cnt++; } END { if (cnt != 2) exit 1; }' "${BASEDIR}/result.tsv" \
-  || fail "Check 2 failed. Expected: 2 Actual: $(awk '/^#/ { if ($4 < 1E-20) cnt++; } END { print cnt; }' "${BASEDIR}/result.tsv")"
+  || fail "Check 2 failed. Expected: 2 Actual: $(awk '/^#/ { if ($4 < 1E-20) cnt++; } END { print cnt; }' "${BASEDIR}/result.tsv")"
+
+#foldseek related checks
+awk '/^>/ { cnt++; } END { if (cnt != 568) exit 1; }' "${BASEDIR}/result_foldseek.tsv" \
+  || fail "Check 3 failed. Expected: 568 Actual: $(awk '/^>/ { cnt++; } END { print cnt; }' "${BASEDIR}/result_foldseek.tsv")"