1- /home/z/Desktop/gRASPA_versions/080424 -code/gRASPA_fork/src_clean/nvc_main.xChecking if all inputs are defined
2- True path of exe is /home/z/Desktop/gRASPA_versions/080424 -code/gRASPA_fork/src_clean/
1+ /home/z/Desktop/gRASPA_versions/082824 -code/gRASPA_fork/src_clean/nvc_main.xChecking if all inputs are defined
2+ True path of exe is /home/z/Desktop/gRASPA_versions/082824 -code/gRASPA_fork/src_clean/
33There are 1 simulations
44running only one simulation
55------------------PARSING FORCE FIELD MIXING RULES----------------
@@ -71,6 +71,7 @@ i: 88, ii: 8, jj: 8, Name_i: C_xyl, Name_j: C_xyl, ep: 29.3001479918, sig: 3.550
7171i: 89, ii: 8, jj: 9, Name_i: C_xyl, Name_j: H_xyl, ep: 19.1351272366, sig: 2.9850000000, shift: -0.0181287134
7272i: 99, ii: 9, jj: 9, Name_i: H_xyl, Name_j: H_xyl, ep: 12.4966295209, sig: 2.4200000000, shift: -0.0033622375
7373----- END OF MIXED VDW PARAMETERS -----
74+ THERE ARE 10 PSEUDO ATOMS
7475-------------PARSING PSEUDO ATOMS FILE-------------
7576Name: HH, 0.00000, 1.00000, 0.00000, 0.00000
7677Name: c, 0.00000, 12.00000, 0.00000, 0.00000
@@ -461,8 +462,8 @@ Component: 2, SelfAtomE: 0.00000 (0.00000 kJ/mol)
461462Component: 0, Intra-Molecular ExclusionE: -32892160.48297 (-39560200.18912 kJ/mol)
462463Component: 1, Intra-Molecular ExclusionE: -243671.40556 (-293069.51695 kJ/mol)
463464Component: 2, Intra-Molecular ExclusionE: 0.00000 (0.00000 kJ/mol)
464- HostEwald took 0.05826 sec
465- Ewald Summation (total energy) on the CPU took 0.05826 secs
465+ HostEwald took 0.05838 sec
466+ Ewald Summation (total energy) on the CPU took 0.05838 secs
466467Component 0, Intra Exclusion Energy: 32892160.48297 (39560200.18912 kJ/mol)
467468Component 0, Atom Self Exclusion Energy: 7123268.40575 (8567327.89803 kJ/mol)
468469DEBUG: comp: 0, IntraE: 32892160.48297, SelfE: 7123268.40575
@@ -516,7 +517,7 @@ Nblock 127, blocks: 127 0 0, threads needed: 16214 0 0, Nthread: 128
516517GPU VDW REAL ENERGY:
517518HHVDW: 5523439918.42259, HHReal: -6257646.54087, HGVDW: 0.00000, HGReal: 0.00000, GGVDW: 0.00000, GGReal: 0.00000, HHEwaldE: 0.00000, HGEwaldE: 0.00000, GGEwaldE: 0.00000, TailE: 0.00000, DNN_E: 0.00000
518519Stored HGVDW: 0.00000, Stored HGReal: 0.00000, Stored HGEwaldE: 0.00000
519- VDW + Real on the GPU took 0.00556 secs
520+ VDW + Real on the GPU took 0.00560 secs
520521GPU Ewald Summary: NHostAtom: 1856, NGuestAtom: 0
521522GPU Ewald Summary: Nthread: 128, Host thread: 128, Guest thread: 0
522523Host NAtomPerThread: 14, Guest NAtomPerThread: 0
@@ -525,7 +526,7 @@ GPU fourier, HHFourier: 7328.67519, GGFourier: 0.00000, HGFourier: 0.00000, TOTF
525526Framework Component 0 Exclusion: -40015428.88872
526527Component 1, Nblock: 1, Nthread: 128
527528Component 1, Exclusion (self + intra) = -1723558.02282
528- Ewald Summation (total energy) on the GPU took 0.00126 secs
529+ Ewald Summation (total energy) on the GPU took 0.00134 secs
529530Total GPU Energy:
530531HHVDW: 5523439918.42259, HHReal: -6257646.54087, HGVDW: 0.00000, HGReal: 0.00000, GGVDW: 0.00000, GGReal: 0.00000, HHEwaldE: -41731658.23635, HGEwaldE: 0.00000, GGEwaldE: 0.00000, TailE: 0.00000, DNN_E: 0.00000
531532Stored HGVDW: 0.00000, Stored HGReal: 0.00000, Stored HGEwaldE: 0.00000
@@ -551,8 +552,8 @@ Component: 2, SelfAtomE: 0.00000 (0.00000 kJ/mol)
551552Component: 0, Intra-Molecular ExclusionE: -32892160.48297 (-39560200.18912 kJ/mol)
552553Component: 1, Intra-Molecular ExclusionE: -243671.40556 (-293069.51695 kJ/mol)
553554Component: 2, Intra-Molecular ExclusionE: 0.00000 (0.00000 kJ/mol)
554- HostEwald took 0.05787 sec
555- Ewald Summation (total energy) on the CPU took 0.05787 secs
555+ HostEwald took 0.05783 sec
556+ Ewald Summation (total energy) on the CPU took 0.05783 secs
556557 ****** CHECKING WaveVectors Stored on CPU vs. GPU ******
557558Wave Vector 0, CPU: 0.00000 0.00000, GPU: 0.00000 0.00000
558559Wave Vector 1, CPU: 0.00000 0.00000, GPU: 0.00000 0.00000
@@ -584,7 +585,7 @@ Nblock 127, blocks: 127 0 0, threads needed: 16214 0 0, Nthread: 128
584585GPU VDW REAL ENERGY:
585586HHVDW: 5523439918.42259, HHReal: -6257646.54087, HGVDW: 0.00000, HGReal: 0.00000, GGVDW: 0.00000, GGReal: 0.00000, HHEwaldE: 0.00000, HGEwaldE: 0.00000, GGEwaldE: 0.00000, TailE: 0.00000, DNN_E: 0.00000
586587Stored HGVDW: 0.00000, Stored HGReal: 0.00000, Stored HGEwaldE: 0.00000
587- VDW + Real on the GPU took 0.00048 secs
588+ VDW + Real on the GPU took 0.00052 secs
588589GPU Ewald Summary: NHostAtom: 1856, NGuestAtom: 0
589590GPU Ewald Summary: Nthread: 128, Host thread: 128, Guest thread: 0
590591Host NAtomPerThread: 14, Guest NAtomPerThread: 0
@@ -593,7 +594,7 @@ GPU fourier, HHFourier: 7328.67519, GGFourier: 0.00000, HGFourier: 0.00000, TOTF
593594Framework Component 0 Exclusion: -40015428.88872
594595Component 1, Nblock: 1, Nthread: 128
595596Component 1, Exclusion (self + intra) = -1723558.02282
596- Ewald Summation (total energy) on the GPU took 0.00103 secs
597+ Ewald Summation (total energy) on the GPU took 0.00112 secs
597598Total GPU Energy:
598599HHVDW: 5523439918.42259, HHReal: -6257646.54087, HGVDW: 0.00000, HGReal: 0.00000, GGVDW: 0.00000, GGReal: 0.00000, HHEwaldE: -41731658.23635, HGEwaldE: 0.00000, GGEwaldE: 0.00000, TailE: 0.00000, DNN_E: 0.00000
599600Stored HGVDW: 0.00000, Stored HGReal: 0.00000, Stored HGEwaldE: 0.00000
@@ -671,13 +672,23 @@ Reinsertion Accepted: 0
671672=====================IDENTITY SWAP MOVES=====================
672673=============================================================
673674================================================================================================
674- =====================BLOCK AVERAGES (ENERGIES)================
675- BLOCK [0], Blocksize: 1000, Average: 0.00000, ErrorBar: 0.00000
676- BLOCK [1], Blocksize: 1000, Average: 0.00000, ErrorBar: 0.00000
677- BLOCK [2], Blocksize: 1000, Average: 0.00000, ErrorBar: 0.00000
678- BLOCK [3], Blocksize: 1000, Average: 0.00000, ErrorBar: 0.00000
679- BLOCK [4], Blocksize: 1000, Average: 0.00000, ErrorBar: 0.00000
680- Overall: Average: 0.00000, ErrorBar: 0.00000
675+ ============= BLOCK AVERAGES (HEAT OF ADSORPTION: kJ/mol) =========
676+ WARNING: Matrix Inversion, Gauss-Jordan: Singular Matrix! Qst for the current component may not get calculated correctly!
677+ TIP: Your molecule may have a hard time getting in/out of the system box. Consider making it better by using some moves or NVT moves to relax the system more!
678+ WARNING: Matrix Inversion, Gauss-Jordan: Singular Matrix! Qst for the current component may not get calculated correctly!
679+ TIP: Your molecule may have a hard time getting in/out of the system box. Consider making it better by using some moves or NVT moves to relax the system more!
680+ WARNING: Matrix Inversion, Gauss-Jordan: Singular Matrix! Qst for the current component may not get calculated correctly!
681+ TIP: Your molecule may have a hard time getting in/out of the system box. Consider making it better by using some moves or NVT moves to relax the system more!
682+ WARNING: Matrix Inversion, Gauss-Jordan: Singular Matrix! Qst for the current component may not get calculated correctly!
683+ TIP: Your molecule may have a hard time getting in/out of the system box. Consider making it better by using some moves or NVT moves to relax the system more!
684+ COMPONENT [2] (p-xylene)
685+ BLOCK [0], Blocksize: 1000, Average: -82.49647
686+ BLOCK [1], Blocksize: 1000, Average: -inf
687+ BLOCK [2], Blocksize: 1000, Average: -inf
688+ BLOCK [3], Blocksize: 1000, Average: -inf
689+ BLOCK [4], Blocksize: 1000, Average: -inf
690+ Overall: Average: -inf, ErrorBar: -nan
691+ -----------------------------
681692==============================================================
682693=================== BLOCK AVERAGES (LOADING: # MOLECULES)=============
683694COMPONENT [0] (Al-Bicyclo-AddedH-P1-fix-PBC.cif)
@@ -827,7 +838,7 @@ Printing: Component: 2 [ p-xylene ], NumMol: 3, Molsize: 12
827838Component 0, Molsize: 448
828839Component 1, Molsize: 22
829840Component 2, Molsize: 12
830- Work took 1.529762 seconds
841+ Work took 1.555274 seconds
831842======================================
832843CHECKING FINAL ENERGY FOR SYSTEM [0]
833844======================================
@@ -851,8 +862,8 @@ Component: 2, SelfAtomE: 9891.85715 (11897.17681 kJ/mol)
851862Component: 0, Intra-Molecular ExclusionE: -32892160.48297 (-39560200.18912 kJ/mol)
852863Component: 1, Intra-Molecular ExclusionE: -243671.40556 (-293069.51695 kJ/mol)
853864Component: 2, Intra-Molecular ExclusionE: 9115.33946 (10963.24013 kJ/mol)
854- HostEwald took 0.05915 sec
855- Ewald Summation (total energy) on the CPU took 0.05915 secs
865+ HostEwald took 0.05912 sec
866+ Ewald Summation (total energy) on the CPU took 0.05912 secs
856867 ****** CHECKING WaveVectors Stored on CPU vs. GPU ******
857868Wave Vector 0, CPU: 0.00000 0.00000, GPU: 0.00000 0.00000
858869Wave Vector 1, CPU: 0.00000 0.00000, GPU: 0.00000 0.00000
@@ -895,7 +906,7 @@ Component 1, Nblock: 1, Nthread: 128
895906Component 1, Exclusion (self + intra) = -1723558.02282
896907Component 2, Nblock: 1, Nthread: 128
897908Component 2, Exclusion (self + intra) = -776.51769
898- Ewald Summation (total energy) on the GPU took 0.00109 secs
909+ Ewald Summation (total energy) on the GPU took 0.00112 secs
899910Total GPU Energy:
900911HHVDW: 5523450487.06017, HHReal: -6257686.00080, HGVDW: -22522.69448, HGReal: 173.17031, GGVDW: 20.02303, GGReal: 59.87284, HHEwaldE: -41731646.37098, HGEwaldE: -575.66969, GGEwaldE: -16.86955, TailE: 0.00000, DNN_E: 0.00000
901912Stored HGVDW: 0.00000, Stored HGReal: 0.00000, Stored HGEwaldE: 0.00000
@@ -1041,33 +1052,33 @@ Total Energy: 0.00009 (0.00011 [K])
10411052======================== PRODUCTION PHASE AVERAGE ENERGIES (Simulation 0) =========================
10421053 *** PRODUCTION PHASE AVERAGE ENERGY ***
10431054========================================================================
1044- VDW [Host-Host]: 11597.70969 (13948.84709 [K])
1045- VDW [Host-Guest]: -21925.03318 (-26369.76985 [K])
1046- VDW [Guest-Guest]: -48.11072 (-57.86393 [K])
1047- Real Coulomb [Host-Host]: -42.84603 (-51.53196 [K])
1048- Real Coulomb [Host-Guest]: 159.53179 (191.87275 [K])
1049- Real Coulomb [Guest-Guest]: 23.53715 (28.30870 [K])
1050- Ewald [Host-Host]: 12.62644 (15.18613 [K])
1051- Ewald [Host-Guest]: -532.30799 (-640.21974 [K])
1052- Ewald [Guest-Guest]: 12.62644 (15.18613 [K])
1055+ VDW [Host-Host]: 12263.74250 (14749.90093 [K])
1056+ VDW [Host-Guest]: -23404.97246 (-28149.72877 [K])
1057+ VDW [Guest-Guest]: -46.88289 (-56.38719 [K])
1058+ Real Coulomb [Host-Host]: -45.52184 (-54.75022 [K])
1059+ Real Coulomb [Host-Guest]: 171.36276 (206.10216 [K])
1060+ Real Coulomb [Guest-Guest]: 27.20859 (32.72443 [K])
1061+ Ewald [Host-Host]: 13.36065 (16.06918 [K])
1062+ Ewald [Host-Guest]: -567.56469 (-682.62383 [K])
1063+ Ewald [Guest-Guest]: 13.36065 (16.06918 [K])
10531064DNN Energy: 0.00000 (0.00000 [K])
10541065Tail Correction Energy: 0.00000 (0.00000 [K])
1055- Total Energy: -10742.26640 (-12919.98467 [K])
1066+ Total Energy: -11575.90672 (-13922.62412 [K])
10561067========================================================================
10571068 *** PRODUCTION PHASE AVERAGE ENERGY ERRORBAR ***
10581069========================================================================
1059- VDW [Host-Host]: 4055.57520 (4877.73879 [K])
1060- VDW [Host-Guest]: 5580.27053 (6711.52688 [K])
1061- VDW [Guest-Guest]: 62.98280 (75.75094 [K])
1062- Real Coulomb [Host-Host]: 16.73334 (20.12559 [K])
1063- Real Coulomb [Host-Guest]: 31.82580 (38.27767 [K])
1064- Real Coulomb [Guest-Guest]: 29.61152 (35.61450 [K])
1065- Ewald [Host-Host]: 4.30874 (5.18223 [K])
1066- Ewald [Host-Guest]: 135.59088 (163.07844 [K])
1067- Ewald [Guest-Guest]: 4.30874 (5.18223 [K])
1070+ VDW [Host-Host]: 1620.28603 (1948.75736 [K])
1071+ VDW [Host-Guest]: 2362.08648 (2840.93877 [K])
1072+ VDW [Guest-Guest]: 67.82257 (81.57185 [K])
1073+ Real Coulomb [Host-Host]: 10.69773 (12.86642 [K])
1074+ Real Coulomb [Host-Guest]: 36.50286 (43.90288 [K])
1075+ Real Coulomb [Guest-Guest]: 40.25629 (48.41722 [K])
1076+ Ewald [Host-Host]: 1.71686 (2.06491 [K])
1077+ Ewald [Host-Guest]: 22.01905 (26.48285 [K])
1078+ Ewald [Guest-Guest]: 1.71686 (2.06491 [K])
10681079DNN Energy: 0.00000 (0.00000 [K])
10691080Tail Correction Energy: 0.00000 (0.00000 [K])
1070- Total Energy: 9921.20756 (11932.47727 [K])
1081+ Total Energy: 4163.10474 (5007.06717 [K])
10711082========================================================================
10721083================================================================================
10731084DNN Rejection Summary:
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