diff --git a/{{ cookiecutter.repo_name }}/workflow/Snakefile b/{{ cookiecutter.repo_name }}/workflow/Snakefile index 962c0d6..6e781d9 100644 --- a/{{ cookiecutter.repo_name }}/workflow/Snakefile +++ b/{{ cookiecutter.repo_name }}/workflow/Snakefile @@ -5,7 +5,7 @@ report: "report/workflow.rst" # Allow users to fix the underlying OS via singularity. -singularity: "docker://continuumio/miniconda3" +container: "docker://continuumio/miniconda3" rule all: diff --git a/{{ cookiecutter.repo_name }}/workflow/rules/common.smk b/{{ cookiecutter.repo_name }}/workflow/rules/common.smk index 09feabd..a361616 100644 --- a/{{ cookiecutter.repo_name }}/workflow/rules/common.smk +++ b/{{ cookiecutter.repo_name }}/workflow/rules/common.smk @@ -3,7 +3,7 @@ import pandas as pd # this container defines the underlying OS for each job when using the workflow # with --use-conda --use-singularity -singularity: "docker://continuumio/miniconda3" +container: "docker://continuumio/miniconda3" ##### load config and sample sheets #####