From ba9747496ecc871496af13bc550a38f94ebf0507 Mon Sep 17 00:00:00 2001 From: Ekin-Kahraman Date: Sat, 11 Apr 2026 20:36:42 +0100 Subject: [PATCH] docs: add inline example plot to sc.pl.correlation_matrix Part of #1664. Shows group correlation matrix with dendrogram on PBMC 68k reduced. --- src/scanpy/plotting/_anndata.py | 13 +++++++++---- 1 file changed, 9 insertions(+), 4 deletions(-) diff --git a/src/scanpy/plotting/_anndata.py b/src/scanpy/plotting/_anndata.py index 155cac9877..b187891b31 100755 --- a/src/scanpy/plotting/_anndata.py +++ b/src/scanpy/plotting/_anndata.py @@ -1783,10 +1783,15 @@ def correlation_matrix( # noqa: PLR0912, PLR0913, PLR0915 Examples -------- - >>> import scanpy as sc - >>> adata = sc.datasets.pbmc68k_reduced() - >>> sc.tl.dendrogram(adata, "bulk_labels") - >>> sc.pl.correlation_matrix(adata, "bulk_labels") + Plot correlation matrix between cell type groups. + + .. plot:: + :context: close-figs + + import scanpy as sc + adata = sc.datasets.pbmc68k_reduced() + sc.tl.dendrogram(adata, "bulk_labels") + sc.pl.correlation_matrix(adata, "bulk_labels") """ dendrogram_key = _get_dendrogram_key(adata, _dk(dendrogram), groupby)