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| name: Run ScAPE Tests | ||
| on: | ||
| push: | ||
| branches: [main] | ||
| pull_request: | ||
| branches: [main] | ||
| jobs: | ||
| test: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout code | ||
| uses: actions/checkout@v4 | ||
| - name: Set up Python | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: '3.10' | ||
| - name: Cache _data directory | ||
| uses: actions/cache@v4 | ||
| with: | ||
| path: _data | ||
| key: scape-data-${{ runner.os }}-${{ hashFiles('**/pyproject.toml') }} | ||
| restore-keys: | | ||
| scape-data-${{ runner.os }}- | ||
| - name: Install package | ||
| run: pip install . | ||
| - name: Run test code | ||
| run: | | ||
| python -c " | ||
| import scape | ||
| scape.io.download_from_zenodo(target_dir = '.') | ||
| result = scape.api.train( | ||
| de_file='_data/de_train.parquet', | ||
| lfc_file='_data/lfc_train.parquet', | ||
| cv_drug='Belinostat', | ||
| n_genes=64 | ||
| ) | ||
| scape.util.plot_result(result._last_train_results) | ||
| " | ||
