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good first issueRelatively simple issue that would be a good someone who is new to payuRelatively simple issue that would be a good someone who is new to payu
Description
So I was just doing a run of this:
And Angus runs on project g40 (link) whereas I need to run on tm70, once I changed this everything worked fine:
[cyb561.gadi-login-03: angus-global-8km]$ payu run
laboratory path: /scratch/x77/cyb561/access-om3
binary path: /scratch/x77/cyb561/access-om3/bin
input path: /scratch/x77/cyb561/access-om3/input
work path: /scratch/x77/cyb561/access-om3/work
archive path: /scratch/x77/cyb561/access-om3/archive
Found experiment archive: /scratch/x77/cyb561/access-om3/archive/angus-global-8km-expt-cdc850ab
Loading input manifest: manifests/input.yaml
Loading restart manifest: manifests/restart.yaml
Loading exe manifest: manifests/exe.yaml
payu: Found modules in /opt/Modules/v4.3.0
qsub -q normalsr -P tm70 -l walltime=05:00:00 -l ncpus=4992 -l mem=24576GB -l jobfs=10GB -N 8km_jra_ryf -l wd -j n -v PAYU_PATH=/g/data/vk83/apps/base_conda/envs/payu-1.2.1/bin,MODULESHOME=/opt/Modules/v4.3.0,MODULES_CMD=/opt/Modules/v4.3.0/libexec/modulecmd.tcl,MODULEPATH=/g/data/vk83/modules:/etc/scl/modulefiles:/opt/Modules/modulefiles:/opt/Modules/v4.3.0/modulefiles:/apps/Modules/modulefiles -l storage=gdata/vk83+gdata/x77+scratch/x77 -- /g/data/vk83/./apps/conda_scripts/payu-1.2.1.d/bin/launcher.sh /g/data/vk83/./apps/base_conda/envs/payu-1.2.1/bin/python3.10 /g/data/vk83/apps/base_conda/envs/payu-1.2.1/bin/payu-run
158862370.gadi-pbsbut I had this error when originally trying on Angus' g40:
[cyb561.gadi-login-03: angus-global-8km]$ payu run
laboratory path: /scratch/x77/cyb561/access-om3
binary path: /scratch/x77/cyb561/access-om3/bin
input path: /scratch/x77/cyb561/access-om3/input
work path: /scratch/x77/cyb561/access-om3/work
archive path: /scratch/x77/cyb561/access-om3/archive
Found experiment archive: /scratch/x77/cyb561/access-om3/archive/angus-global-8km-expt-cdc850ab
Loading input manifest: manifests/input.yaml
Loading restart manifest: manifests/restart.yaml
Loading exe manifest: manifests/exe.yaml
payu: Found modules in /opt/Modules/v4.3.0
qsub -q normalsr -P g40 -l walltime=05:00:00 -l ncpus=4992 -l mem=24576GB -l jobfs=10GB -N 8km_jra_ryf -l wd -j n -v PAYU_PATH=/g/data/vk83/apps/base_conda/envs/payu-1.2.1/bin,MODULESHOME=/opt/Modules/v4.3.0,MODULES_CMD=/opt/Modules/v4.3.0/libexec/modulecmd.tcl,MODULEPATH=/g/data/vk83/modules:/etc/scl/modulefiles:/opt/Modules/modulefiles:/opt/Modules/v4.3.0/modulefiles:/apps/Modules/modulefiles -l storage=gdata/vk83+gdata/x77+scratch/x77 -- /g/data/vk83/./apps/conda_scripts/payu-1.2.1.d/bin/launcher.sh /g/data/vk83/./apps/base_conda/envs/payu-1.2.1/bin/python3.10 /g/data/vk83/apps/base_conda/envs/payu-1.2.1/bin/payu-run
Traceback (most recent call last):
File "/g/data/vk83/apps/base_conda/envs/payu-1.2.1/bin/payu", line 10, in <module>
sys.exit(parse())
File "/g/data/vk83/apps/base_conda/envs/payu-1.2.1/lib/python3.10/site-packages/payu/cli.py", line 49, in parse
run_cmd(**args)
File "/g/data/vk83/apps/base_conda/envs/payu-1.2.1/lib/python3.10/site-packages/payu/subcommands/run_cmd.py", line 116, in runcmd
job_id = cli.submit_job('payu-run', pbs_config, pbs_vars)
File "/g/data/vk83/apps/base_conda/envs/payu-1.2.1/lib/python3.10/site-packages/payu/cli.py", line 173, in submit_job
result = subprocess.run(shlex.split(cmd), capture_output=True, check=True)
File "/g/data/vk83/apps/base_conda/envs/payu-1.2.1/lib/python3.10/subprocess.py", line 524, in run
raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['qsub', '-q', 'normalsr', '-P', 'g40', '-l', 'walltime=05:00:00', '-l', 'ncpus=4992', '-l', 'mem=24576GB', '-l', 'jobfs=10GB', '-N', '8km_jra_ryf', '-l', 'wd', '-j', 'n', '-v', 'PAYU_PATH=/g/data/vk83/apps/base_conda/envs/payu-1.2.1/bin,MODULESHOME=/opt/Modules/v4.3.0,MODULES_CMD=/opt/Modules/v4.3.0/libexec/modulecmd.tcl,MODULEPATH=/g/data/vk83/modules:/etc/scl/modulefiles:/opt/Modules/modulefiles:/opt/Modules/v4.3.0/modulefiles:/apps/Modules/modulefiles', '-l', 'storage=gdata/vk83+gdata/x77+scratch/x77', '--', '/g/data/vk83/./apps/conda_scripts/payu-1.2.1.d/bin/launcher.sh', '/g/data/vk83/./apps/base_conda/envs/payu-1.2.1/bin/python3.10', '/g/data/vk83/apps/base_conda/envs/payu-1.2.1/bin/payu-run']' returned non-zero exit status 32.Maybe this error could be clearer? This strikes me as the kind of thing new users run up against all the time.
I had a skim through the issues but couldn't see anything related to this -- sorry if I missed it.
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good first issueRelatively simple issue that would be a good someone who is new to payuRelatively simple issue that would be a good someone who is new to payu