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README.md

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@@ -32,17 +32,33 @@ Online discussion: [https://github.com/pFindStudio/pFind3/issues](https://github
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## pFind Release Notes
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#### Version 3.1.3 - August 1 2018
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#### Version 3.1.4 - Nov. 21 2018
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* [pFind-GUI] [IMPORTANT] Added a new quantitation method of "Report-Intensity", which is the same as the common identification workflow but call pQuant to calculate the intensity of each peptide afterwards.
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* [Kernel] [IMPORTANT] Fixed a bug of processing large protein databases (> 4GB).
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* [pFind-GUI] User must click the 'Save' button and then click the 'Start' button to start a search.
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* [pFind-GUI] Changed the default parameters of TMT-6plex and TMT-10plex
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* [pFind-GUI] Fixed a bug of saving parameter files in processing MS2 quantitation
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* [pBuild] Added the feature of reporting all retention times of the identified peptides.
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* [pBuild] Added the feature of reporting all matched b/y ions of the identified PSMs.
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* [pBuild] Fixed some typos in the interface.
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* [pBuild] Optimized the demonstration of the identification with MGF files.
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* [Kernel] Output the procedure of generating peptide candidates when the program is running.
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* [Kernel] Output a new result file named "pFind-Filtered.spectra", which contains the target PSMs within the given FDR threshold, e.g., 0.01.
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* [pParse] Fixed a bug of output the .csv file of large MS/MS data (it may contain multiple headers).
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* [pParse] Supported the export of precursors of low resoluation MS1 data (do not call pParse algorithm but only output the corresponding .pf1 and .pf2 files for the following database search).
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* License since version 3.1.3 is still valid for this version.
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#### Version 3.1.3 - Aug. 1 2018
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* [IMPORTANT] The new expiration date is August 1, 2019. As the license module is updated, please applied for the new license file.
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* [IMPORTANT] Fixed a bug when setting the workspace directory.
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* [IMPORTANT] Fixed a bug of the license module which may affect the registration of some users using Win 10 system.
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* Fixed a text error in the pFind.spectra file.</li>
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* Fixed a text error in the pFind.spectra file.
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* Added a warning when users choose "open search" for low resolution MS/MS data.
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* Added the option of retrieving all PSMs by any given protein accession number in pBuild.
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* Optimized the appearance of the welcome page.
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* Optimized the option of comparing two PSMs.
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* Optimized the naming rule of the temporary files output by the kernel program.
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#### Version 3.1.2 - April 10 2018
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#### Version 3.1.2 - Apr. 10 2018
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* The first released version.
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