Neurosynth Compose: Ecosystem for Reproducible Meta-Analyses #20
Description
Title
Neurosynth Compose: Ecosystem for Reproducible Meta-Analyses
Short description and the goals for the OHBM BrainHack
We are aiming to make meta-analyses more systematic, reproducible, and overall less painful with an online interface and lots of pre-ingested data for you to use freely!
Our platform now hosts over 30,000 neuroimaging papers that report coordinates, making the arduous phase of transcribing coordinates simpler than ever.
We have a number of projects to work on, whether it's your first time programming or if you're a seasoned veteran.
Novice
- Test out our sleuth file import feature (try to break it and give feedback)
- Work on a script to add DOI/PMID to the sleuth files automatically
- Use our tutorial and give feedback
- Help validate paper-extracted information from GPT
Intermediate
- write code to create figures to do some exploratory data analysis/Validation on data we've ingested.
- formalize the DOI/PMID adding script into a function in NiMARE
- profile memory consumption in running the NiMARE reports CBMA module
- add documentation to publang: interface to extract information from academic papers (https://github.com/adelavega/publang)
Advanced
- redo the cognitive atlas python package using a more modern API generator
- help create a script to extract references to papers within meta-analysis papers
- create a NIDM to NiMARE function
- Prompt Engineering/workflow design for publang to extract task information
- representing participant demographics in our database.
Link to the Project
https://github.com/neurostuff/neurostore
Image/Logo for the OHBM brainhack website
Project lead
James Kent @jdkent jdkent
Alejandro De La Vega @adelavega neurozorro
Julio Peraza @JulioAPeraza N/A
Main Hub
Seoul
Link to the Project pitch
No response
Other hubs covered by the leaders
- Seoul
- Hybrid (Asia / Pacific)
- Hybrid (Europe / Middle East / Africa)
- Hybrid (Americas)
Skills
- None
- Ran a meta-analysis before (using any technology)
- written a bash script
- read in files with python
- use plotting libraries with python
- created a pull request using git/github
Recommended tutorials for new contributors
No response
Good first issues
No response
Twitter summary
If you're interested in or learning about meta-analyses, AI, data engineering, and everything in between, come checkout Neurosynth Compose! We have projects for every skill level.
Short name for the Discord chat channel (~15 chars)
neurosynth-compose
Please read and follow the OHBM Code of Conduct
- I agree to follow the OHBM Code of Conduct during the hackathon