Physiopy - Documentation of Physiological Signal Acquisition Best Practices #85
Description
Title
Physiopy - Documentation of Physiological Signal Acquisition Best Practices
Short description and the goals for the OHBM BrainHack
Physiopy is a community formed around developing tools to operate physiological files in MRI setups. This project specifically will expand our package documentation containing tips and strategies on how to collect various forms of physiological data and the use of our packages. We aim to provide a succinct overview of what physiological data are typically recorded during an fMRI experiment, how these signals are recorded, and how these signals can improve our modeling of fMRI time series data. This is an active field of research, and we hope to encourage all users to get the latest recommendations prior to initiating a new study.
Link to the Project
https://github.com/physiopy/physiopy.github.io
Image for the OHBM brainhack website
https://github.com/physiopy/phys2bids/blob/master/docs/_static/physiopy_logo_1280x640.png?raw=true
Project lead
Sarah Goodale, Github Username: goodalse2019 , Discord Username: sarah goodale#5094
Inês Esteves, Github Username: isesteves, Discord Username: iesteves#5699
Main Hub
Glasgow
Other Hub covered by the leaders
- Glasgow
- Asia / Pacific
- Europe / Middle East / Africa
- Americas
Skills
Excitement for learning the best practices in physiological signal acquisition. We welcome all contributions from any skill set and level, this project will predominantly be focused on documentation contributions.
Git - we welcome any level of git (0-3), markdown knowledge helpful
Recommended tutorials for new contributors
- Set up a brainhack friendly computing environment
- A introduction to Bash
- Python: Writing a script
- Python: Data analysis with Python
- Python: Visualisation
- Machine learning basics
- BIDS
- Machine learning for neuroimaging
- VCS: Using Git and Github
- VCS: Data management with Datalad
- Virtualization
- High Performance Computing: Oracle cloud resource
Good first issues
- Improve documentation for package
- Build best practices libraries and summaries for various physiological signals (e.g., respiratory, cardiac, skin conductance, etc.)
- Check open source libraries and software similar to what we do
- Find links to educational courses of interest
- Build list of open source datasets with physiological signals
Twitter summary
Come join us at Physiopy working on documentation of physiological signal acquisition and best practices
physiopy/physiopy.github.io
@s_goodale23 @isesteves
#OHBMHackathon #Brainhack #OHBM2022
Short name for the Discord chat channel (~15 chars)
physiopy-documentation
Please read and follow the OHBM Code of Conduct
- I agree to follow the OHBM Code of Conduct during the hackathon