Consesus peaks #298
Description
Description of feature
Hi all,
So, I was looking at the code regarding consensus peak calculation.
The code provides a consensus file by merging the peaks for different replicates (bedtools merge).
There are a lot of tools out there that do a far better job:
IDR for 2 replicates (if I am not mistaken and also not so good with all type of peak callers),
consensusSeekeR from bioconductor, I can also provide a code that works well with the seacr stringent peaks, for you people to properly implent,
epigraHMM, still not sure how well works,
...among others.
Maybe this needs to be checked?
and also the module that is shared between other tools like the chipseq needs to be updated?