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run the post-processing steps in the prepare pipeline in parallel

enhancementNew feature or requestNew feature or request

low-priority

Status: Open.

#14 In mcvickerlab/varCA;

· aryarm opened on Jun 9, 2020

a smaller test dataset

enhancementNew feature or requestNew feature or request

Status: Open.

#33 In mcvickerlab/varCA;

· aryarm opened on Jul 4, 2021

update install instructions

Status: Draft (not ready).

mcvickerlab/varCAnumber 27

#27 In mcvickerlab/varCA;

· aryarm opened on Apr 6, 2021

Error: "An output file is marked as pipe, but consuming jobs are part of conflicting groups."

bugSomething isn't workingSomething isn't working

Status: Open.

#38 In mcvickerlab/varCA;

· Rubbert opened on Aug 12, 2021

only install the necessary variant caller dependencies

breakingthis will break backwards-compatibilitythis will break backwards-compatibility

enhancementNew feature or requestNew feature or request

Status: Open.

#19 In mcvickerlab/varCA;

· aryarm opened on Jul 15, 2020

prepare.yml environment yields conflicts with strict channel_priority

bugSomething isn't workingSomething isn't working

Status: Open.

#30 In mcvickerlab/varCA;

· aryarm opened on Jun 26, 2021

comply with snakemake standards

enhancementNew feature or requestNew feature or request

Status: Open.

#35 In mcvickerlab/varCA;

· aryarm opened on Jul 14, 2021

snakemake validation

breakingthis will break backwards-compatibilitythis will break backwards-compatibility

enhancementNew feature or requestNew feature or request

low-priority

Status: Open.

#18 In mcvickerlab/varCA;

· aryarm opened on Jun 30, 2020

Single-end support

enhancementNew feature or requestNew feature or request

Status: Open.

#37 In mcvickerlab/varCA;

· Rubbert opened on Aug 4, 2021

add GT info to the VCFs

enhancementNew feature or requestNew feature or request

Status: Open.

#43 In mcvickerlab/varCA;

· shinlin77 opened on Apr 1, 2022