Update CellMapDatasetWriter integration in CellMapSubset for improved… #441
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - "v*" | |
| pull_request: | |
| workflow_dispatch: | |
| jobs: | |
| docs: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| - name: Install docs dependencies | |
| run: | | |
| pip install -U pip | |
| pip install .[dev] | |
| - name: Build docs | |
| run: | | |
| cd docs | |
| make html | |
| format: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| - name: Install black | |
| run: pip install black | |
| - name: Check formatting | |
| run: black --check src tests | |
| test: | |
| name: ${{ matrix.platform }} (${{ matrix.python-version }}) | |
| runs-on: ${{ matrix.platform }} | |
| needs: [docs, format] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.11', '3.12'] | |
| platform: [ubuntu-latest, macos-latest, windows-latest] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache-dependency-path: "pyproject.toml" | |
| cache: "pip" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install -U pip | |
| python -m pip install .[test] | |
| - name: Test | |
| run: pytest --color=yes --cov --cov-report=xml --cov-report=term-missing | |
| - name: Coverage | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| tag-release: | |
| name: Tag Release | |
| needs: test | |
| runs-on: ubuntu-latest | |
| if: success() && github.ref == 'refs/heads/main' && github.event_name == 'push' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Git user | |
| run: | | |
| git config user.name "github-actions[bot]" | |
| git config user.email "github-actions[bot]@users.noreply.github.com" | |
| - name: Get PEP440 date tag | |
| id: date_tag | |
| run: | | |
| year=$(date -u +'%Y' | sed 's/^0*//') | |
| month=$(date -u +'%m' | sed 's/^0*//') | |
| day=$(date -u +'%d' | sed 's/^0*//') | |
| hour=$(date -u +'%H' | sed 's/^0*//') | |
| minute=$(date -u +'%M' | sed 's/^0*//') | |
| tag="$year.$month.$day.$hour$minute" | |
| echo "tag=$tag" >> $GITHUB_OUTPUT | |
| - name: Create and push tag | |
| run: | | |
| git tag ${{ steps.date_tag.outputs.tag }} | |
| git push origin ${{ steps.date_tag.outputs.tag }} | |
| - name: Create GitHub Release with Notes | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| gh release create ${{ steps.date_tag.outputs.tag }} --generate-notes --title "${{ steps.date_tag.outputs.tag }}" | |
| publish: | |
| name: Publish | |
| needs: tag-release | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Install build tools | |
| run: pip install -U pip hatch twine | |
| - name: Build sdist and wheel | |
| run: hatch build -t sdist -t wheel | |
| - name: Check distributions | |
| run: twine check dist/* | |
| - name: Publish to PyPI | |
| run: twine upload dist/* | |
| env: | |
| TWINE_USERNAME: __token__ | |
| TWINE_PASSWORD: ${{ secrets.PYPI_TOKEN }} |