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Merge pull request #7 from jMetal/feature/refresh-saes
Feature/refresh saes
2 parents 6c22a5a + 53c7d20 commit e310871

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‎.editorconfig‎

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# EditorConfig is awesome: https://EditorConfig.org
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# top-most EditorConfig file
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root = true
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# Unix-style newlines with a newline ending every file
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[*]
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end_of_line = lf
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insert_final_newline = true
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charset = utf-8
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trim_trailing_whitespace = true
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# Python files
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[*.py]
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indent_style = space
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indent_size = 4
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max_line_length = 120
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# Markdown files
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[*.md]
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trim_trailing_whitespace = false
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max_line_length = off
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# YAML files
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[*.{yml,yaml}]
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indent_style = space
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indent_size = 2
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# JSON files
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[*.json]
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indent_style = space
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indent_size = 2
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# TOML files
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[*.toml]
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indent_style = space
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indent_size = 4
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# reStructuredText files
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[*.rst]
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indent_style = space
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indent_size = 3
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max_line_length = off
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# Makefile
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[Makefile]
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indent_style = tab
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# Shell scripts
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[*.sh]
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indent_style = space
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indent_size = 2
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‎.github/workflows/test.yml‎

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steps:
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- uses: actions/checkout@v4
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- name: Install uv
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uses: astral-sh/setup-uv@v4
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with:
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version: "latest"
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- name: Set up Python 3.10
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uses: actions/setup-python@v3
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uses: actions/setup-python@v5
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with:
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python-version: "3.10"
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- name: Install dependencies
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run: |
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python -m pip install --upgrade pip
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python -m pip install -e .[test]
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uv pip install --system -e .[test,html]
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- name: Test with unittest
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run: |
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coverage run -m unittest discover tests

‎.gitignore‎

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# Environments
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.env
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.venv
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.venv/
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env/
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venv/
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ENV/
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env.bak/
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venv.bak/
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# uv
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uv.lock
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.python-version
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# Spyder project settings
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.spyderproject
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.spyproject

‎.pre-commit-config.yaml‎

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# Pre-commit hooks for SAES
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# Install with: pre-commit install
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# Run manually with: pre-commit run --all-files
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repos:
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# General file checks
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- repo: https://github.com/pre-commit/pre-commit-hooks
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rev: v4.5.0
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hooks:
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- id: trailing-whitespace
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- id: end-of-file-fixer
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- id: check-yaml
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- id: check-toml
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- id: check-json
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- id: check-added-large-files
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args: ['--maxkb=1000']
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- id: check-merge-conflict
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- id: check-case-conflict
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- id: mixed-line-ending
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args: ['--fix=lf']
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# Python code formatting
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- repo: https://github.com/psf/black
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rev: 24.1.1
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hooks:
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- id: black
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language_version: python3.10
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args: ['--line-length=120']
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# Import sorting
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- repo: https://github.com/PyCQA/isort
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rev: 5.13.2
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hooks:
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- id: isort
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args: ['--profile=black', '--line-length=120']
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# Linting
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- repo: https://github.com/PyCQA/flake8
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rev: 7.0.0
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hooks:
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- id: flake8
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args: ['--max-line-length=120', '--extend-ignore=E203,W503']
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additional_dependencies: [flake8-docstrings]
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# Type checking (optional - may need adjustments)
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# - repo: https://github.com/pre-commit/mirrors-mypy
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# rev: v1.8.0
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# hooks:
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# - id: mypy
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# additional_dependencies: [types-all]
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# args: ['--ignore-missing-imports']
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‎CHANGELOG.md‎

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All notable changes to this project will be documented in this file.
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The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/).
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The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
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and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
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## [Unreleased]
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### Fixed
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- Corrected 'frtom' typo to 'from' in all plot module docstrings (23 instances across 5 files)
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## [Released]
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## [RELEASE_VERSION] - Released on RELEASE_DATE by COMMIT_AUTHOR
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## [1.3.6] - 2025-03-18
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### Added
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- HistoPlot visualization for algorithm performance distribution
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- Violin plot for enhanced performance distribution visualization
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### Fixed
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- Various bug fixes and added code comments for better maintainability
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## [1.3.5] - 2025-03-13
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### Added
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- Anova and T-test tables for parametric statistical analysis
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- Extra Friedman test variations (aligned-rank, Quade) for non-parametric analysis
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- ML notebook example demonstrating library usage with machine learning algorithms
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- Comprehensive tests for new features
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### Changed
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- Mean/median now used as estimators of best and second-best performance in LaTeX tables
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- Improved documentation across the entire library
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- Updated Bayesian notebook with better examples
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### Fixed
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- Bug in MeanMedian table show() function
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## [1.3.4] - 2025-03-06
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### Added
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- Frequency graph to the Bayesian posterior plot (Pplot)
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- Article references for statistical test implementations
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### Fixed
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- Fixed dependency issues (v2)
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- Fixed tests to accommodate new changes
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## [1.3.2] - 2025-03-06
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### Changed
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- Updated internal dependencies and configurations
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## [1.3.1] - 2025-03-05
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### Fixed
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- Minor bug fixes and improvements
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## [1.3.0] - 2025-03-05
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### Added
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- Bayesian posterior plot (Pplot) for probabilistic algorithm comparison
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- HTML module for generating interactive analysis reports
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### Changed
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- Updated multi-objective fronts notebook
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- Updated sphinx documentation
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## [1.2.0] - 2025-03-04
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### Added
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- Reference fronts support in 2D and 3D for multi-objective optimization module
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- Parallel coordinates visualization for multi-objective analysis
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- Fronts notebook with comprehensive examples
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### Changed
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- Updated all SAES fstring documentation format
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### Fixed
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- Bug fixed in pareto_front.py
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## [1.1.0] - 2025-02-26
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### Changed
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- Updated Sphinx documentation to v1.1.0
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- Updated README.md with improved examples and instructions
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## [1.0.3] - 2025-02-07
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### Changed
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- Documentation improvements and README updates
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## [1.0.2] - 2025-02-06
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### Changed
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- Minor improvements and documentation updates
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## [1.0.1] - 2025-02-06
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### Fixed
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- Initial post-release bug fixes
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## [1.0.0] - 2025-02-05
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### Added
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- First stable release
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- Core statistical analysis features (Friedman test, Wilcoxon signed-rank test)
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- LaTeX table generation (Median, Friedman, Wilcoxon tables)
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- Visualization tools (Boxplot, Critical Distance plot)
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- Multi-objective optimization support (Pareto front visualization)
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- Command-line interface
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- Comprehensive documentation
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## [0.6.0] - 2025-02-03
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### Added
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- Pre-release version with core features
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- Initial multi-objective optimization module
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## [0.5.1] - 2025-01-21
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### Added
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- Initial beta release
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- Basic statistical testing framework
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- CSV data processing utilities
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[Unreleased]: https://github.com/jMetal/SAES/compare/v1.3.6...HEAD
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[1.3.6]: https://github.com/jMetal/SAES/compare/v1.3.5...v1.3.6
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[1.3.5]: https://github.com/jMetal/SAES/compare/v1.3.4...v1.3.5
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[1.3.4]: https://github.com/jMetal/SAES/compare/v1.3.2...v1.3.4
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[1.3.2]: https://github.com/jMetal/SAES/compare/v1.3.1...v1.3.2
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[1.3.1]: https://github.com/jMetal/SAES/compare/v1.3.0...v1.3.1
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[1.3.0]: https://github.com/jMetal/SAES/compare/v1.2.0...v1.3.0
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[1.2.0]: https://github.com/jMetal/SAES/compare/v1.1.0...v1.2.0
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[1.1.0]: https://github.com/jMetal/SAES/compare/v1.0.3...v1.1.0
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[1.0.3]: https://github.com/jMetal/SAES/compare/v1.0.2...v1.0.3
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[1.0.2]: https://github.com/jMetal/SAES/compare/v1.0.1...v1.0.2
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[1.0.1]: https://github.com/jMetal/SAES/compare/v1.0.0...v1.0.1
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[1.0.0]: https://github.com/jMetal/SAES/compare/v0.6.0...v1.0.0
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[0.6.0]: https://github.com/jMetal/SAES/compare/v0.5.1...v0.6.0
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[0.5.1]: https://github.com/jMetal/SAES/releases/tag/v0.5.1

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