Skip to content

Downsampling functionality #453

@Camerashots

Description

@Camerashots

Please describe your idea or what you want to achieve

Dear Vadim,

thank you for this amazing set of packages, they really helped me to get into TCR analysis! I'm currently analysing TCR produced with biomed2 primers, and to my understanding it is recommended to do downsampling do avoid PCR and sequencing depth bias. I'd wonder, whether there's any plan to implement the downsampling function into immunarch v1? And, although unrelated, do you plan to retrain AIRR-GPT on updated version of the API? I tried it, but the suggested functions are mostly depricated/not working.

Thanks for your time and keep on with the great work!
Best,
Matej

Metadata

Metadata

Assignees

No one assigned

    Labels

    enhancementNew feature or request

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions