Can we get the exact sequence of clustTCR?

[linqy-immune]

Hi @Alexander230 ,
Thank you very much for developing this excellent tool. I like it and appreciate your work a lot!
I just used the "Cluster" function attempting to find the overlap CDR3aa in a group of repertoires, but I found that although I have come to "clustTCR" step and get the return list, I still can't get the certain information including CDR3aa of the same cluster from "clustTCR".
Is there a limitation that we can only analyze Clustering by one sample/repertoire? The plot exhibited on the immunarch website only contains "cluster size destribution", is there any other method for me to explore this function like visualizing V/J gene or aa?
I am so sorry to ask such questions and hope to get your help.
Thanks and best regards,
Linqy

[vadimnazarov]

Hi @linqy-immune , I'm afraid I must say that it is better to wait for the next version #432 . I'm sorry that you got into the immunarch right in the middle of a huge rewriting of it 😿

[linqy-immune]

Ahhhh, what a pity! But I appreciate your meaningful work, and I deeply expect and wait for the awesome new version as I saw that the new version is coming soon!