build based on 1fb006e

Author: Documenter.jl

dev/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.11.6","generation_timestamp":"2025-07-16T10:32:00","documenter_version":"1.14.1"}}
+{"documenter":{"julia_version":"1.11.6","generation_timestamp":"2025-07-16T10:49:00","documenter_version":"1.14.1"}}

dev/docstrings/index.html

@@ -45,4 +45,4 @@
 extinct_sp::Integer,
 B_start::AbstractVector;
 t_end = 1_000,
-threshold = 1e-6,</code></pre><p>)</p><p>Compute secondary extinctions following the primary extinction of <code>extinct_sp</code> of a model <code>m</code> with initial biomasses <code>B_start</code>.</p><p><strong>Keyword arguments</strong></p><ul><li><code>t_end</code> specifies the duration of simulation</li><li><code>threshold</code> gives the biomass below which a species is considered extinct.</li></ul><p>See also <a href="#EcoNetPostProcessing.robustness-Tuple{Model}"><code>robustness</code></a>.</p></div><a class="docs-sourcelink" target="_blank" href="https://github.com/econetoolbox/EcoNetPostProcessing.jl">source</a></section></article><article class="docstring"><header><a class="docstring-article-toggle-button fa-solid fa-chevron-down" href="javascript:;" title="Collapse docstring"></a><a class="docstring-binding" id="EcoNetPostProcessing.sensitivity-Tuple{Model, AbstractVector}" href="#EcoNetPostProcessing.sensitivity-Tuple{Model, AbstractVector}"><code>EcoNetPostProcessing.sensitivity</code></a> — <span class="docstring-category">Method</span><span class="is-flex-grow-1 docstring-article-toggle-button" title="Collapse docstring"></span></header><section><div><pre><code class="language-julia hljs">sensitivity(m::Model, B::AbstractVector)</code></pre><p>Compute the sensitivity matrix of the model <code>m</code>. Because interactions are density-dependent, the vectory of species biomass <code>B</code> should be specified. The sensitivity matrix is defined as the inverse of the interaction matrix. See <a href="https://doi.org/10.1146/annurev-ecolsys-032416-010215">Novak et al. 2016</a>.</p></div><a class="docs-sourcelink" target="_blank" href="https://github.com/econetoolbox/EcoNetPostProcessing.jl">source</a></section></article><article class="docstring"><header><a class="docstring-article-toggle-button fa-solid fa-chevron-down" href="javascript:;" title="Collapse docstring"></a><a class="docstring-binding" id="ForwardDiff.jacobian-Tuple{Model, AbstractVector}" href="#ForwardDiff.jacobian-Tuple{Model, AbstractVector}"><code>ForwardDiff.jacobian</code></a> — <span class="docstring-category">Method</span><span class="is-flex-grow-1 docstring-article-toggle-button" title="Collapse docstring"></span></header><section><div><pre><code class="language-julia hljs">jacobian(m::Model, B::AbstractVector)</code></pre><p>Compute the jacobian of the system specied by the model <code>B</code>. The jacobian is evaluated in <code>B</code> which gives species biomass.</p></div><a class="docs-sourcelink" target="_blank" href="https://github.com/econetoolbox/EcoNetPostProcessing.jl">source</a></section></article></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../utils/">« Utilities</a><a class="docs-footer-nextpage" href="../references/">References »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.14.1 on <span class="colophon-date" title="Wednesday 16 July 2025 10:32">Wednesday 16 July 2025</span>. Using Julia version 1.11.6.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+threshold = 1e-6,</code></pre><p>)</p><p>Compute secondary extinctions following the primary extinction of <code>extinct_sp</code> of a model <code>m</code> with initial biomasses <code>B_start</code>.</p><p><strong>Keyword arguments</strong></p><ul><li><code>t_end</code> specifies the duration of simulation</li><li><code>threshold</code> gives the biomass below which a species is considered extinct.</li></ul><p>See also <a href="#EcoNetPostProcessing.robustness-Tuple{Model}"><code>robustness</code></a>.</p></div><a class="docs-sourcelink" target="_blank" href="https://github.com/econetoolbox/EcoNetPostProcessing.jl">source</a></section></article><article class="docstring"><header><a class="docstring-article-toggle-button fa-solid fa-chevron-down" href="javascript:;" title="Collapse docstring"></a><a class="docstring-binding" id="EcoNetPostProcessing.sensitivity-Tuple{Model, AbstractVector}" href="#EcoNetPostProcessing.sensitivity-Tuple{Model, AbstractVector}"><code>EcoNetPostProcessing.sensitivity</code></a> — <span class="docstring-category">Method</span><span class="is-flex-grow-1 docstring-article-toggle-button" title="Collapse docstring"></span></header><section><div><pre><code class="language-julia hljs">sensitivity(m::Model, B::AbstractVector)</code></pre><p>Compute the sensitivity matrix of the model <code>m</code>. Because interactions are density-dependent, the vectory of species biomass <code>B</code> should be specified. The sensitivity matrix is defined as the inverse of the interaction matrix. See <a href="https://doi.org/10.1146/annurev-ecolsys-032416-010215">Novak et al. 2016</a>.</p></div><a class="docs-sourcelink" target="_blank" href="https://github.com/econetoolbox/EcoNetPostProcessing.jl">source</a></section></article><article class="docstring"><header><a class="docstring-article-toggle-button fa-solid fa-chevron-down" href="javascript:;" title="Collapse docstring"></a><a class="docstring-binding" id="ForwardDiff.jacobian-Tuple{Model, AbstractVector}" href="#ForwardDiff.jacobian-Tuple{Model, AbstractVector}"><code>ForwardDiff.jacobian</code></a> — <span class="docstring-category">Method</span><span class="is-flex-grow-1 docstring-article-toggle-button" title="Collapse docstring"></span></header><section><div><pre><code class="language-julia hljs">jacobian(m::Model, B::AbstractVector)</code></pre><p>Compute the jacobian of the system specied by the model <code>B</code>. The jacobian is evaluated in <code>B</code> which gives species biomass.</p></div><a class="docs-sourcelink" target="_blank" href="https://github.com/econetoolbox/EcoNetPostProcessing.jl">source</a></section></article></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../utils/">« Utilities</a><a class="docs-footer-nextpage" href="../references/">References »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.14.1 on <span class="colophon-date" title="Wednesday 16 July 2025 10:49">Wednesday 16 July 2025</span>. Using Julia version 1.11.6.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>