diff --git a/lib/Bio/MView/GroupMap.pm b/lib/Bio/MView/GroupMap.pm index ea10ab0..e225db2 100644 --- a/lib/Bio/MView/GroupMap.pm +++ b/lib/Bio/MView/GroupMap.pm @@ -461,4 +461,27 @@ pyrimidine => y { C, T, U, Y } . => . C => C { C } +[D_IUPAC] +#DNA consensus w/ IUPAC ambiguity codes +#Example: https://droog.gs.washington.edu/parc/images/iupac.html +#Example2: https://docs.denovodna.com/docs/iupac-codes +#description => symbol members +. => . +A => A { A } +C => C { C } +G => G { G } +T => T { T } +U => U { U } +purine => r { A, G, R } +pyrimidine => y { C, T, U, Y } +W => w { A, T } +S => s { C, G } +Y => y { C, T } +K => k { G, T } +V => v { A, C, G } +H => h { A, C, T } +D => d { A, G, T } +B => b { C, G, T } +N => n { G, A, T, C, N } + ###########################################################################