From 9681418da72c0cb458efecfc756d14783cf27fc1 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 6 Jan 2026 18:24:28 +0000 Subject: [PATCH] Bump the python-packages group across 1 directory with 3 updates Bumps the python-packages group with 3 updates in the / directory: [ipython](https://github.com/ipython/ipython), [imagecodecs](https://github.com/cgohlke/imagecodecs) and [poethepoet](https://github.com/nat-n/poethepoet). Updates `ipython` from 9.8.0 to 9.9.0 - [Release notes](https://github.com/ipython/ipython/releases) - [Commits](https://github.com/ipython/ipython/compare/9.8.0...9.9.0) Updates `imagecodecs` from 2025.11.11 to 2026.1.1 - [Release notes](https://github.com/cgohlke/imagecodecs/releases) - [Changelog](https://github.com/cgohlke/imagecodecs/blob/master/CHANGES.rst) - [Commits](https://github.com/cgohlke/imagecodecs/compare/v2025.11.11...v2026.1.1) Updates `poethepoet` from 0.39.0 to 0.40.0 - [Release notes](https://github.com/nat-n/poethepoet/releases) - [Commits](https://github.com/nat-n/poethepoet/compare/v0.39.0...v0.40.0) --- updated-dependencies: - dependency-name: ipython dependency-version: 9.9.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-packages - dependency-name: imagecodecs dependency-version: 2026.1.1 dependency-type: direct:production update-type: version-update:semver-major dependency-group: python-packages - dependency-name: poethepoet dependency-version: 0.40.0 dependency-type: direct:development update-type: version-update:semver-minor dependency-group: python-packages ... Signed-off-by: dependabot[bot] --- poetry.lock | 50 +++++++++++++++++++++++++------------------------- pyproject.toml | 4 ++-- 2 files changed, 27 insertions(+), 27 deletions(-) diff --git a/poetry.lock b/poetry.lock index f75a844..eb45fbd 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1894,27 +1894,27 @@ files = [ [[package]] name = "imagecodecs" -version = "2025.11.11" +version = "2026.1.1" description = "Image transformation, compression, and decompression codecs" optional = false python-versions = ">=3.11" groups = ["main"] files = [ - {file = "imagecodecs-2025.11.11-cp311-abi3-macosx_10_15_x86_64.whl", hash = "sha256:f5d01cc85ca2fe354302b3650f4848e8f1d3174200277b7cb2624abed4d02ea5"}, - {file = "imagecodecs-2025.11.11-cp311-abi3-macosx_11_0_arm64.whl", hash = "sha256:45a865690275a3a8893c4c54377c678a7b361ebe13dd3a9e22c66443a96b1c2a"}, - {file = "imagecodecs-2025.11.11-cp311-abi3-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:be6e2f4b6601b57cfc9fba2382da7e02ad43c44e3b037adbf275a11f688b231f"}, - {file = "imagecodecs-2025.11.11-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:d4a3894b62ca6ad0c4d75cb0a0aac2a525c4a5c4a2a60defc5d7fb716a4bb355"}, - {file = "imagecodecs-2025.11.11-cp311-abi3-win32.whl", hash = "sha256:3735ea088321b0685e593c5d44fc1d146a84fcf6645c52ed136fa576e16c3572"}, - {file = "imagecodecs-2025.11.11-cp311-abi3-win_amd64.whl", hash = "sha256:4252b15f5ba55bc7d7aacf621f6bb6e73fd70e66d56277a1f26563198b2cd576"}, - {file = "imagecodecs-2025.11.11-cp311-abi3-win_arm64.whl", hash = "sha256:f4480973fcf2d826ba6806b7ac6f4d9bd72eeb557cfd3687ac885939d130ec47"}, - {file = "imagecodecs-2025.11.11-cp314-cp314t-macosx_10_15_x86_64.whl", hash = "sha256:bb0f4714e60dd94b94ca778b872fb90b885b83381228743903035d79b7e91a88"}, - {file = "imagecodecs-2025.11.11-cp314-cp314t-macosx_11_0_arm64.whl", hash = "sha256:faf4ab8f2f11694aa2d6ed7548ce1d1598a14e326a6bb3d50669ed5c7da764c6"}, - {file = "imagecodecs-2025.11.11-cp314-cp314t-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:fdb475f54d0abac3cfcde42ec47f606eea1d4afa52173420577317102d361ae5"}, - {file = "imagecodecs-2025.11.11-cp314-cp314t-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:e3d4cb2dc507c0bab057321333927575d1d611efe368e76b752f5ad3c55856ad"}, - {file = "imagecodecs-2025.11.11-cp314-cp314t-win32.whl", hash = "sha256:7bcc214d6f6ecd2bd7b648a6ac5589edcde946bcb738b6c763ce1c864934c58c"}, - {file = "imagecodecs-2025.11.11-cp314-cp314t-win_amd64.whl", hash = "sha256:58dbc0095142dcef55aaac392ee5bd8fb7c3656753e3c37424c3612209c656a4"}, - {file = "imagecodecs-2025.11.11-cp314-cp314t-win_arm64.whl", hash = "sha256:dd61871455ae6c3486051e68e0d576d54e53c45d157ce233c4a09269f132bf48"}, - {file = "imagecodecs-2025.11.11.tar.gz", hash = "sha256:a836d329f91c890d17b9dc3f3a2bba944a198ae741592c3cb0c4b9b097d10d34"}, + {file = "imagecodecs-2026.1.1-cp311-abi3-macosx_10_14_x86_64.whl", hash = "sha256:ddbe8175d102180a3eac12151dff564aabfbbf6818b91f3751202a45dd197966"}, + {file = "imagecodecs-2026.1.1-cp311-abi3-macosx_11_0_arm64.whl", hash = "sha256:d9f9f1954cf4b2dd290e6bac9ac3ba391f3104bac76c0632f5c3b3e0ea532420"}, + {file = "imagecodecs-2026.1.1-cp311-abi3-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:6b1a40124ad7e36474a70413f81d39d0840e7b0749833b84d90ba7f1034cca2a"}, + {file = "imagecodecs-2026.1.1-cp311-abi3-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:ad867cd5910af53ebfb19f745eaee7288e0a60674302dbd0f01707a5ba522b24"}, + {file = "imagecodecs-2026.1.1-cp311-abi3-win32.whl", hash = "sha256:b7d761e5dd2dde66d7857ebbd34d1f85ce06597a1cf178035fb857997ddba2c1"}, + {file = "imagecodecs-2026.1.1-cp311-abi3-win_amd64.whl", hash = "sha256:da312557677b233802f57f083271e9a4c561770a3ae3886d715fdc9c7cb07336"}, + {file = "imagecodecs-2026.1.1-cp311-abi3-win_arm64.whl", hash = "sha256:edbddcc6b9a76292d7bc64e01f61ac6a60200ae3c58e102d65c4ae07e972de8d"}, + {file = "imagecodecs-2026.1.1-cp314-cp314t-macosx_10_15_x86_64.whl", hash = "sha256:54d7ef5b1216cf12815bb5893212e106ee14b80b3181096a3284d51d739ed060"}, + {file = "imagecodecs-2026.1.1-cp314-cp314t-macosx_11_0_arm64.whl", hash = "sha256:220eeb6def567276b1db82ecb8c04b5a796b3667bf1d496727a5ee8e383da118"}, + {file = "imagecodecs-2026.1.1-cp314-cp314t-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:a20ba6fec43961889eb33b1d685c05ad17ddec71f0e39ebd15c44e49499b0300"}, + {file = "imagecodecs-2026.1.1-cp314-cp314t-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:47540427ada77579e579d43d76b93914f2f751cfbbb8486c48753adef75e6be5"}, + {file = "imagecodecs-2026.1.1-cp314-cp314t-win32.whl", hash = "sha256:74d109fd9d77953b76cec1a9476baee49636ffe3b734ba72110fd0d73643ec36"}, + {file = "imagecodecs-2026.1.1-cp314-cp314t-win_amd64.whl", hash = "sha256:7b4785917c00f8a97c4a2a70941ec1900a97bac8f7382222da653ec6b106b9e2"}, + {file = "imagecodecs-2026.1.1-cp314-cp314t-win_arm64.whl", hash = "sha256:d7e6a330f93a4c0794cb2b12d1b0a5fd4d1df0e38cc77948ca8b339b8f2d5439"}, + {file = "imagecodecs-2026.1.1.tar.gz", hash = "sha256:1bf7fd913bfcc33d72b788aa2ccdcfae163beb04eb380dec9c8d05bcee956caa"}, ] [package.dependencies] @@ -1922,7 +1922,7 @@ numpy = "*" [package.extras] all = ["matplotlib", "numcodecs", "tifffile"] -test = ["bitshuffle", "blosc", "blosc2", "brotli", "czifile", "kerchunk", "lz4", "numcodecs", "pyliblzfse", "pytest", "pytest-run-parallel", "python-lzf", "python-snappy", "tifffile", "zarr", "zopflipy", "zstd"] +test = ["backports.zstd", "bitshuffle", "blosc", "blosc2", "brotli", "czifile", "kerchunk", "liffile", "lz4", "numcodecs", "pyliblzfse", "pytest", "pytest-run-parallel", "python-lzf", "python-snappy", "tifffile", "zarr", "zopflipy"] [[package]] name = "imageio" @@ -2039,14 +2039,14 @@ test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio [[package]] name = "ipython" -version = "9.8.0" +version = "9.9.0" description = "IPython: Productive Interactive Computing" optional = false python-versions = ">=3.11" groups = ["main", "dev", "docs"] files = [ - {file = "ipython-9.8.0-py3-none-any.whl", hash = "sha256:ebe6d1d58d7d988fbf23ff8ff6d8e1622cfdb194daf4b7b73b792c4ec3b85385"}, - {file = "ipython-9.8.0.tar.gz", hash = "sha256:8e4ce129a627eb9dd221c41b1d2cdaed4ef7c9da8c17c63f6f578fe231141f83"}, + {file = "ipython-9.9.0-py3-none-any.whl", hash = "sha256:b457fe9165df2b84e8ec909a97abcf2ed88f565970efba16b1f7229c283d252b"}, + {file = "ipython-9.9.0.tar.gz", hash = "sha256:48fbed1b2de5e2c7177eefa144aba7fcb82dac514f09b57e2ac9da34ddb54220"}, ] [package.dependencies] @@ -2063,7 +2063,7 @@ traitlets = ">=5.13.0" typing_extensions = {version = ">=4.6", markers = "python_version < \"3.12\""} [package.extras] -all = ["ipython[doc,matplotlib,test,test-extra]"] +all = ["argcomplete (>=3.0)", "ipython[doc,matplotlib,terminal,test,test-extra]"] black = ["black"] doc = ["docrepr", "exceptiongroup", "intersphinx_registry", "ipykernel", "ipython[matplotlib,test]", "setuptools (>=70.0)", "sphinx (>=8.0)", "sphinx-rtd-theme (>=0.1.8)", "sphinx_toml (==0.0.4)", "typing_extensions"] matplotlib = ["matplotlib (>3.9)"] @@ -4121,14 +4121,14 @@ testing = ["pytest", "pytest-benchmark"] [[package]] name = "poethepoet" -version = "0.39.0" +version = "0.40.0" description = "A task runner that works well with poetry and uv." optional = false python-versions = ">=3.10" groups = ["dev"] files = [ - {file = "poethepoet-0.39.0-py3-none-any.whl", hash = "sha256:2865b04230df0fb43b6fb4f739c975b19be03d6db18f0ab760b3fb5c56b50b5c"}, - {file = "poethepoet-0.39.0.tar.gz", hash = "sha256:85f279ffaf2a58ba31db2048ab897740d4db839233c3f28740cf0517b3367710"}, + {file = "poethepoet-0.40.0-py3-none-any.whl", hash = "sha256:afd276ae31d5c53573c0c14898118d4848ccee3709b6b0be6a1c6cbe522bbc8a"}, + {file = "poethepoet-0.40.0.tar.gz", hash = "sha256:91835f00d03d6c4f0e146f80fa510e298ad865e7edd27fe4cb9c94fdc090791b"}, ] [package.dependencies] @@ -6499,4 +6499,4 @@ test = ["big-O", "importlib-resources ; python_version < \"3.9\"", "jaraco.funct [metadata] lock-version = "2.1" python-versions = ">=3.11,<3.14" -content-hash = "07148d6a2dac9b0f9e038dc458493ff009d53b1350d4a0b33acdf6e023299412" +content-hash = "c7bb258a3f5a8bd080c72416dd3bd1a7568eeb40e04ffb32ed7c4fcc046df293" diff --git a/pyproject.toml b/pyproject.toml index 3df28da..baa848e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -37,7 +37,7 @@ pywavelets = [ ] # used for image modifications in cytodataframe opencv-python = "^4.10.0.84" -imagecodecs = ">=2024.9.22,<2026.0.0" +imagecodecs = ">=2024.9.22,<2027.0.0" matplotlib = "^3.9.3" ipywidgets = "^8.1.7" imageio = "^2.37.0" @@ -58,7 +58,7 @@ jupyterlab-code-formatter = "^3.0.2" duckdb = "^1.1.3" # version specifications below used to help surpass 3.13-based installations cosmicqc = { version = ">=1.0.1", markers = "python_version < '3.13' and python_version >= '3.10'" } -poethepoet = ">=0.37,<0.40" +poethepoet = ">=0.37,<0.41" [tool.poetry.group.docs.dependencies] # used for rendering docs into docsite