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@@ -236,17 +236,16 @@ subgraph of a network called a *backbone*.
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## Exploratory Data Analysis
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`r pkg ("igraph")`, `r pkg ("sna")`, and `r pkg("manynet")` offer functions for
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a similar set of network-analytic and visualization operations, whereas `r pkg ("tidygraph")` is
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more limited. However, some algorithms differ from each other and from those
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are some specialized packages for their implementation, speed, or defaults.
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Moving to Exploratory Data Analysis (EDA), `r pkg ("igraph")`, `r pkg ("sna")`, and `r pkg("manynet")` offer functions for a similar set of network-analytic and visualization operations, whereas `r pkg ("tidygraph")` is more limited. However, some algorithms differ from each other and from those are some specialized packages for their implementation, speed, or defaults.
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### General
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-`r pkg("tsna")` implements a number of methods for exploratory
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analysis and summaries of temporal networks in the `r pkg("networkDynamic")`
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representation.
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- Reletadly to EDA, `r pkg("NetworkDistance")` offers many measures to compute the distance between two networks based on centrality, continuous spectral densities, the Euclidean distance between the adjacency matrices' spectra, the Frobenius norm of edge-to-edge difference, exponential kernel matrices, graphons, the discrepancy between two binary networks for each edge (Hamming), a combines the local Hamming distance and the global Ipsen-Mikhailov distance, and the log of graph moments.
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### Visualization
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#### Interactive visualization
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and cluster model using `r pkg("network")` objects and compatibly with
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`r pkg("ergm")` approaches.
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- relatedly, `r pkg("VBLPCM")` offers an alternative to `r pkg("latentnet")` for larger networks (on which the latter's package algorithm may be computationally prohibitive). It computes the approximation of the posterior of the `latentnet::ergmm()` function using a Variational Bayesian Expectation Maximisation algorithm. Thus, it is faster than the full-fledged MCMC sampler more accurate than `r pkg("latentnet")`'s two-stage maximum likelihood estimation (MLE). Indeed, Variational Bayes tends to converge quicker than the two-stage MLE, too.
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-`r pkg("latenetwork")` implements a method for causal inference with noncompliance
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and network interference of unknown form on average causal using instrumental variables.
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@@ -636,6 +637,10 @@ contagion processes. It implements algorithms for calculating network diffusion
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statistics such as transmission rate, hazard rates, exposure models, network
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threshold levels, infectiousness (contagion), and susceptibility.
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### Others
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- `r pkg("graphon") provides methods for estimating the *graphon* of a network based on tis adjacency matrix using empirical degree-sorting for stochastic blockmodel (SBM), SBM approximation, universal singular value thresholding, or neighborhood smoothing. Also, on the basis of the estiamted model, it can complete a matrix from a partially observed data. Additionally, it includes function to generate binary graph given an arbitrary graphon, Erdos-Renyi random graphs, and SBMs. Besides including 10 graphon models for simulation.
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## Field packages
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As an interdisciplinary approach, network analysis is used in a number of
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