Fix tests

Author: Donaim

micall/tests/referenceless_tests_utils.py

@@ -29,6 +29,11 @@ def disable_kmer_filter(monkeypatch):
     monkeypatch.setattr("micall.utils.referenceless_contig_stitcher.KMER_SIZE", 1)
 
 
+@pytest.fixture(autouse=True)
+def disable_min_overlap_size(monkeypatch):
+    monkeypatch.setattr("micall.utils.referenceless_contig_stitcher.MIN_OVERLAP_SIZE", 0)
+
+
 @pytest.fixture
 def disable_acceptable_prob_check(monkeypatch):
     monkeypatch.setattr("micall.utils.referenceless_contig_stitcher.MIN_MATCHES", 0)

micall/tests/test_referenceless_contig_stitcher.py

@@ -7,12 +7,13 @@
 from micall.utils.referenceless_contig_path import ContigsPath
 
  # Load autouse fixtures
-from micall.tests.referenceless_tests_utils import disable_acceptable_prob_check, force_failing_map_overlap, disable_kmer_filter
+from micall.tests.referenceless_tests_utils import disable_acceptable_prob_check, force_failing_map_overlap, disable_kmer_filter, disable_min_overlap_size
 
 # prevent linter warnings
 assert disable_acceptable_prob_check is not None
 assert force_failing_map_overlap is not None
 assert disable_kmer_filter is not None
+assert disable_min_overlap_size is not None
 
 TTT = 40 * 'T'
 AAA = 40 * 'A'

micall/tests/test_referenceless_contig_stitcher_exact.py

@@ -18,14 +18,15 @@
 from micall.utils.contig_stitcher_context import ReferencelessStitcherContext
 
 # Load autouse fixtures
-from micall.tests.referenceless_tests_utils import disable_acceptable_prob_check, log_check, random_fasta_file, run_full_pipeline, load_projects, disable_kmer_filter
+from micall.tests.referenceless_tests_utils import disable_acceptable_prob_check, log_check, random_fasta_file, run_full_pipeline, load_projects, disable_kmer_filter, disable_min_overlap_size
 
 # to avoid linter warnings
 assert disable_acceptable_prob_check is not None
 assert log_check is not None
 assert random_fasta_file is not None
 assert load_projects is not None
 assert disable_kmer_filter is not None
+assert disable_min_overlap_size is not None
 
 
 def params(good: Iterable[int], bad: Iterable[object], reason_fmt: str) -> Iterator[object]: