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Remove unused binding
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micall/utils/referenceless_contig_stitcher.py

Lines changed: 3 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -64,13 +64,12 @@ def get_kmers(cache: MutableMapping[str, AbstractSet[str]], contig_sequence: str
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if existing is not None:
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return existing
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67-
kmer_size = KMER_SIZE
68-
if len(contig_sequence) < kmer_size:
67+
if len(contig_sequence) < KMER_SIZE:
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return set()
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kmers = set()
72-
for i in range(len(contig_sequence) - kmer_size + 1):
73-
kmer = contig_sequence[i:i + kmer_size]
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for i in range(len(contig_sequence) - KMER_SIZE + 1):
72+
kmer = contig_sequence[i:i + KMER_SIZE]
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kmers.add(kmer)
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cache[contig_sequence] = kmers

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