Error while getting models

[deriteidavid]

Hey! I ran into this error while trying to get the models from the cellcollective:

In [12]: import ccapi                                                           

In [13]: client=ccapi.Client()                                                  

In [14]: models=client.get('model')                                             
---------------------------------------------------------------------------
TypeError                                 Traceback (most recent call last)
<ipython-input-14-ea451a0c5350> in <module>
----> 1 models=client.get('model')

~/anaconda2/envs/python_3_env/lib/python3.7/site-packages/ccapi-0.1.0-py3.7.egg/ccapi/api/client.py in get(self, resource, *args, **kwargs)
    498                 ids         = [data["model"]["id"] for data in content]
    499 
--> 500                 resources   = self.get("model", id = ids)
    501         elif _resource == "user":
    502             if not id_:

~/anaconda2/envs/python_3_env/lib/python3.7/site-packages/ccapi-0.1.0-py3.7.egg/ccapi/api/client.py in get(self, resource, *args, **kwargs)
    469                     _model_content_to_model(model,
    470                         users = users, client = self) \
--> 471                             for _, model in iteritems(models)
    472                 ])
    473             else:

~/anaconda2/envs/python_3_env/lib/python3.7/site-packages/ccapi-0.1.0-py3.7.egg/ccapi/api/client.py in <listcomp>(.0)
    469                     _model_content_to_model(model,
    470                         users = users, client = self) \
--> 471                             for _, model in iteritems(models)
    472                 ])
    473             else:

~/anaconda2/envs/python_3_env/lib/python3.7/site-packages/ccapi-0.1.0-py3.7.egg/ccapi/api/helper.py in _model_content_to_model(content, users, client)
    228             users       = users,
    229             parent      = model,
--> 230             client      = client,
    231         )
    232         model           = _merge_metadata_to_model(model, meta)

~/anaconda2/envs/python_3_env/lib/python3.7/site-packages/ccapi-0.1.0-py3.7.egg/ccapi/api/helper.py in _model_version_response_to_boolean_model(response, meta, users, parent, client)
    163                 type        = lower(regulator_data["regulationType"]),
    164                 conditions  = [data["condition"]
--> 165                     for _, data in iteritems(condition_map)
    166                         if data["regulator_id"] == int(regulator_id)
    167                 ]

TypeError: __init__() missing 1 required positional argument: 'species'

I got the same error also with an authenticated client and also when running the example from the documentation:

model = ccapi.load_model("fibroblasts", client = client)

I hope it's an easy fix. Thanks! :)

P.S. I installed the package by running the setup.py install after cloning it from GitHub, because I can't seem to find it in pip. I'm running Ubuntu 18.04.

[achillesrasquinha]

Hi! Apologies to respond a bit late on this. Let me take a look.