removed preprint that now has journal publication

Author: nlharris

publications_selected.md

@@ -19,7 +19,6 @@ Names of BBOP team members are bolded.
 * Niyonkuru E, **Caufield JH**, Carmody L, Gargano M, Toro S, Whetzel PL, Blau H, Gomez MS, Casiraghi E, Chimirri L, **Reese JT,** Valentini G, Haendel MA, **Mungall CJ**, Robinson PN. Leveraging generative AI to assist biocuration of medical actions for rare disease. Bioinform Adv. Oxford University Press; 2025 Jun 12;vbaf141. http://dx.doi.org/10.1093/bioadv/vbaf141/63477910/vbaf141  
 * Karamarie Fecho, Gwênlyn Glusman, Sergio E. Baranzini, Chris Bizon, Matthew Brush, William Byrd, Lawrence Chung, Andrew Crouse, Eric Deutsch, Michel Dumontier, Aleksandra Foksinska, Jennifer Hadlock, Kaiwen He, Sui Huang, Robert Hubal, Gregory M. Hyde, Sharat Israni, Kelyne Kenmogne, David Koslicki, Jana Dorfman Marcette, Ewy A. Mathe, Abrar Mesbah, **Sierra A. T. Moxon, Christopher J. Mungall**, John Osborne, Carrie Pasfield, Guangrong Qin, Stephen A. Ramsey, **Justin Reese**, Jared C. Roach, Reese Rose, Karthik Soman, Andrew I. Su, Casey Ta, Gaurav Vaidya, Rosina Weber, Qi Wei, Mark Williams, Chunlei Wu, Colleen Xu, Chase Yakaboski, The Biomedical Data Translator Consortium. Announcing the biomedical data Translator: Initial public release. *Clin Transl Sci*. Wiley; 2025; http://dx.doi.org/10.1111/cts.70284.
 * Mullen KR, Tammen I, Matentzoglu NA, Mather M, Balhoff JP, Esdaile E, Leroy G, Park CA, Rando HM, Saklou NT, Webb TL, Vasilevsky NA, **Mungall CJ**, Haendel MA, Nicholas FW, Toro S. The Vertebrate Breed Ontology: Toward effective breed data standardization. J Vet Intern Med. Wiley; 2025 Jul;39(4):e70133. http://dx.doi.org/10.1111/jvim.70133 PMCID: PMC12103836
-* Preprint: **Mungall CJ**, Malik A, Korn DR, **Reese JT,** O’Boyle NM, Noel, Hastings J. Chemical classification program synthesis using generative artificial intelligence. arXiv \[cs.AI\]. 2025\. http://arxiv.org/abs/2505.18470  
 * Preprint: Krishnamurthy M, Korn D, Haendel MA, **Mungall CJ**, Thessen AE. A dynamic framework for semantic grouping of Common Data Elements (CDE) using embeddings and clustering. arXiv \[cs.IR\]. 2025\. http://arxiv.org/abs/2506.02160   
 * Bridges Y, Souza V de, Cortes KG, Haendel M, **Harris NL**, Korn DR, Marinakis NM, Matentzoglu N, McLaughlin JA, **Mungall CJ**, Odell A, Osumi-Sutherland D, Robinson PN, Smedley D, Jacobsen JOB. Towards a standard benchmark for phenotype-driven variant and gene prioritisation algorithms: PhEval \- Phenotypic inference Evaluation framework. BMC Bioinformatics. England; 2025 Mar 22;26(1):87. http://dx.doi.org/10.1186/s12859-025-06105-4 PMID: 40121479     
 * Matentzoglu N, Bello S, Stefancsik R, Alghamdi SM, Anagnostopoulos AV, Balhoff J, Balk MA, Bradford YM, Bridges Y, Callahan TJ, **Caufield H,** Cuzick A, Carmody L, Caron AR, De Souza V, Engel S, Fey P, Fisher M, Gehrke S, Grove C, Hansen P, **Harris NL**, Harris M, Harris L, Ibrahim A, Jacobsen JOB, Köhler S, McMurry J, Munoz-Fuentes V, Munoz-Torres M, Parkinson H, Pendlington Z, Pilgrim C, Robb SMC, Robinson PN, Seager J, Segerdell E, Smedley D, Sollis E, Toro S, Vasilevsky N, Wood V, Haendel MA, **Mungall CJ**, McLaughlin JA, Osumi-Sutherland D. The Unified Phenotype Ontology : a framework for cross-species integrative phenomics. Genetics. Oxford University Press; 2025 Mar 1;229(3):iyaf027. https://doi.org/10.1186/s12859-025-06105-4 PMID: 40048704