From 245b54685cabf9f363aeac6ffb231d6b52790a2c Mon Sep 17 00:00:00 2001 From: Nicole Guittari Date: Tue, 18 Feb 2025 16:48:39 -0500 Subject: [PATCH] Including EMBER related instructions --- docs/13_upload.md | 16 ++++++++-------- docs/16_account.md | 16 ++++++++-------- 2 files changed, 16 insertions(+), 16 deletions(-) diff --git a/docs/13_upload.md b/docs/13_upload.md index 02667235..67afe7d2 100644 --- a/docs/13_upload.md +++ b/docs/13_upload.md @@ -1,4 +1,4 @@ -# Creating Dandisets and Uploading Data +# Creating Dandisets and Uploading Data to EMBER-DANDI This page provides instructions for creating a new Dandiset and uploading data to DANDI. @@ -14,7 +14,7 @@ This page provides instructions for creating a new Dandiset and uploading data t Feel free to [reach out to us for help](https://github.com/dandi/helpdesk/discussions). 2. **Choose a server.** - - **Production server**: https://dandiarchive.org. This is the main server for DANDI and should be used for sharing neuroscience data. + - **Production server**: https://dandi.emberarchive.org. This is the main server for EMBER-DANDI and should be used for sharing neuroscience data. When you create a Dandiset, a permanent ID is automatically assigned to it. This Dandiset can be fully public or embargoed according to NIH policy. All data are uploaded as draft and can be adjusted before publishing on the production server. @@ -24,11 +24,11 @@ This page provides instructions for creating a new Dandiset and uploading data t The below instructions will alert you to where the commands for interacting with these two different servers differ slightly. -3. **Register for DANDI and copy the API key.** To create a new Dandiset and upload your data, you need to have a DANDI account. - * If you do not already have an account, see [Create a DANDI Account](./16_account.md) page for instructions. +3. **Register for EMBER-DANDI and copy the API key.** To create a new Dandiset and upload your data, you need to have an EMBER-DANDI account. + * If you do not already have an account, see [Create an EMBER-DANDI Account](./16_account.md) page for instructions. * Once you are logged in, copy your API key. Click on your user initials in the top-right corner after logging in. - Production (https://dandiarchive.org) and staging (https://gui-staging.dandiarchive.org) servers have different API keys and different logins. + Production (https://dandi.emberarchive.org) and staging (https://dandi.emberarchive.org) servers have different API keys and different logins. * Store your API key somewhere that the CLI can find it; see ["Storing Access Credentials"](#storing-access-credentials) below. ## Data upload/management workflow @@ -57,7 +57,7 @@ The CLI approach may be more suitable for users who are comfortable with the com nwbinspector --help Thoroughly read the NWBInspector report and try to address as many issues as possible. - **DANDI will prevent validation and upload of any issues labeled as level 'CRITICAL' or above when using the `--config dandi` option.** + **EMBER-DANDI will prevent validation and upload of any issues labeled as level 'CRITICAL' or above when using the `--config dandi` option.** See ["Validation Levels for NWB Files"](./135_validation.md) for more information about validation criteria for uploading NWB files and which are deemed critical. We recommend regularly running the inspector early in the process to generate the best NWB files possible. Note that some auto-detected violations, such as `check_data_orientation`, may be safely ignored in the event that the data is confirmed to be in the correct form. See [the NWBInspector CLI documentation](https://nwbinspector.readthedocs.io/en/dev/user_guide/using_the_command_line_interface.html) for more information. @@ -74,7 +74,7 @@ The CLI approach may be more suitable for users who are comfortable with the com 1. **Upload the data to DANDI.** This can either be done through the NWB GUIDE, or programmatically: - dandi download https://dandiarchive.org/dandiset//draft + dandi download https://dandi.emberarchive.org//draft cd dandi organize -f dry dandi organize @@ -87,7 +87,7 @@ The CLI approach may be more suitable for users who are comfortable with the com If you have an issue using the DANDI Client, see the [DANDI Debugging section](./15_debugging.md). 1. **Add metadata to the Dandiset.** Visit your Dandiset landing page: - `https://dandiarchive.org/dandiset//draft` and click on the `METADATA` link. + `https://dandi.emberarchive.org/dandiset//draft` and click on the `METADATA` link. ## Storing Access Credentials diff --git a/docs/16_account.md b/docs/16_account.md index 8479f559..a7c8aaa2 100644 --- a/docs/16_account.md +++ b/docs/16_account.md @@ -1,17 +1,17 @@ # Create a DANDI Account -A DANDI account enhances your capabilities within the DANDI Archive. +A EMBER-DANDI account enhances your capabilities within the EMBER-DANDI Archive. Without an account, users can freely search, view, and download available datasets. -With an account, users can create and edit Dandisets, and use the DANDI Hub to analyze data. +With an account, users can create and edit Dandisets, and use the EMBER-DANDI Hub to analyze data. -DANDI provides two servers: +EMBER-DANDI provides two servers: -- **Main server**: [https://dandiarchive.org/](https://dandiarchive.org/) - This is the primary platform for most users. -- **Staging server**: [https://gui-staging.dandiarchive.org/](https://gui-staging.dandiarchive.org/) - Ideal for training and testing purposes. +- **Main server**: [https://dandi.emberarchive.org](https://dandi.emberarchive.org) - This is the primary platform for most users using EMBER-DANDI. +- **Staging server**: [https://dandi.emberarchive.org](https://dandi.emberarchive.org) - Ideal for training and testing purposes. Accounts are independently managed on each server, allowing users to register on one or both, depending on their testing and deployment needs. -DANDI is freely accessible to the neuroscience research community. +EMBER-DANDI is freely accessible to the neuroscience research community. Membership is usually granted automatically to GitHub accounts with a `.edu` or similar academic email. If your registration is denied: @@ -21,9 +21,9 @@ If your registration is denied: ## How to Register for a DANDI Account 1. **Create a GitHub Account**: If not already a GitHub user, [sign up here](https://github.com/). -2. **Register on DANDI**: Navigate to the [DANDI homepage](https://dandiarchive.org) and click the `LOG IN WITH GITHUB` button to register using your GitHub account. +2. **Register on EMBER-DANDI**: Navigate to the [EMBER-DANDI homepage](https://dandi.emberarchive.org) and click the `LOG IN WITH GITHUB` button to register using your GitHub account. 3. **Confirmation of Review**: Post-registration, you will receive an email confirming that your account is under review. Your request will be reviewed within 24 hours. - **Note**: Reviews may extend beyond 24 hours for new GitHub accounts or non-.edu email addresses, particularly if the registration does not describe immediate plans to contribute data. -4. **Accessing DANDI**: Upon approval, access DANDI by logging in through the `LOG IN WITH GITHUB` button. +4. **Accessing DANDI**: Upon approval, access EMBER-DANDI by logging in through the `LOG IN WITH GITHUB` button. For support or further inquiries, reach out to [help@dandiarchive.org](mailto:help@dandiarchive.org). \ No newline at end of file