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atlas_info/index.html

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@@ -516,26 +516,32 @@ <h1>Atlas information</h1>
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<h2 id="aseg-freesurfer">aseg (FreeSurfer)</h2>
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<p>Reference: <a href="https://www.sciencedirect.com/science/article/pii/S089662730200569X">Fischl et al. <em>Neuron</em> (2002)</a>. </p>
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<p>Atlas name keyword: <code>aseg</code></p>
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<p>Region names: accumbens, amygdala, caudate, hippocampus, pallidum, putamen, thalamus</p>
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<p><img alt="aseg (FreeSurfer) atlas" src="../images/aseg_3D_to_2D_schematic.png" /></p>
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<h2 id="melbourne-subcortex-atlas-s1">Melbourne Subcortex Atlas (S1)</h2>
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<p>Reference: <a href="https://www.nature.com/articles/s41593-020-00711-6">Tian et al. <em>Nature Neuroscience</em> (2020)</a>.</p>
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<p>Atlas name keyword: <code>Melbourne_S1</code></p>
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<p>Region names: accumbens, amygdala, caudate, hippocampus, pallidum, putamen, thalamus_anterior, thalamus_posterior</p>
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<p><img alt="Melbourne Subcortex (S1) atlas" src="../images/Melbourne_S1_3D_to_2D_schematic.png" /></p>
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<h2 id="melbourne-subcortex-atlas-s2">Melbourne Subcortex Atlas (S2)</h2>
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<p>Reference: <a href="https://www.nature.com/articles/s41593-020-00711-6">Tian et al. <em>Nature Neuroscience</em> (2020)</a>.</p>
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<p>Atlas name keyword: <code>Melbourne_S2</code></p>
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<p>Region names: accumbens_core, accumbens_shell, amygdala_lateral, amygdala_medial, caudate_anterior, caudate_posterior, hippocampus_anterior, hippocampus_posterior, pallidum_anterior, pallidum_posterior, putamen_anterior, putamen_posterior, thalamus_DA, thalamus_DP, thalamus_VA, thalamus_VP</p>
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<p><img alt="Melbourne Subcortex (S2) atlas" src="../images/Melbourne_S2_3D_to_2D_schematic.png" /></p>
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<h2 id="aicha-subcortical-atlas">AICHA subcortical atlas</h2>
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<p>Reference: <a href="https://pubmed.ncbi.nlm.nih.gov/26213217/">Joliot et al. <em>J Neurosci Methods</em> (2015)</a>.</p>
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<p>Atlas name keyword: <code>AICHA</code></p>
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<p>Region names: Amygdala-1, Caudate-1, Caudate-2, Caudate-3, Caudate-4, Caudate-5, Caudate-6, Caudate-7, Pallidum-1, Putamen-2, Putamen-3, Thalamus-1, Thalamus-2, Thalamus-3, Thalamus-4, Thalamus-5, Thalamus-6, Thalamus-7, Thalamus-8, Thalamus-9 </p>
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<p><img alt="AICHA subcortical atlas" src="../images/AICHA_subcortical_atlas_info.png" /></p>
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<h2 id="brainnetome-subcortical-atlas">Brainnetome subcortical atlas</h2>
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<p>Reference: <a href="https://pmc.ncbi.nlm.nih.gov/articles/PMC4961028/">Fan et al. <em>Cerebral Cortex</em> (2016)</a>.</p>
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<p>Atlas name keyword: <code>Brainnetome</code></p>
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<p>Region names: GP, NAC, Otha, PPtha, Stha, cHipp, cTtha, dCa, dlPu, lAmyg, lPFtha, mAmyg, mPFtha, mPMtha, rHipp, rTtha, vCa, vmPu</p>
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<p><img alt="Brainnetome subcortical atlas" src="../images/Brainnetome_subcortex_atlas_info.png" /></p>
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<h2 id="thalamus-nuclei-hcp-atlas">Thalamus Nuclei (HCP) atlas</h2>
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<p>Reference: <a href="https://www.nature.com/articles/sdata2018270">Najdenovska et al. <em>Scientific Data</em> (2018)</a>.</p>
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<p>Atlas name keyword: <code>Thalamus_Nuclei_HCP</code></p>
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<p>Region names: Anterior, Central_Lateral-Lateral_Posterior-Medial_Pulvinar, Medio_Dorsal, Pulvinar, Ventral_Anterior, Ventral_Latero_Dorsal, Ventral_Latero_Ventral</p>
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<p><img alt="Thalamus Nuclei (HCP) atlas" src="../images/Thalamus_Nuclei_HCP_subcortex_atlas_info.png" /></p>
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