program keeps running，no new files

[prometheusloong]

Hi,
I tried to use monomer_inference in rice (2Mb sequence in centromere), the script keep running 4 days, but didn't generate new files 2 days ago. Is it right?
And I found the parameter --min-cluster-size. Can you explain this parameter, should I improve it?

[seryrzu]

Hi,

Wow, 4 days seems too long if you are not running it on reads. Did you try adjusting the number of threads (-t, --threads, by default 1)? How long is your monomer?

Could you please share the data with me at abzikadze@ucsd.edu? I will then take a look and see if you might need to adjust any defaults.

[prometheusloong]

Thanks, i have sent the data to your mail.

[prometheusloong]

Hi,
Did you receive the letter from me named "CentromereArchitect #20 in github" ? Looking forward to your reply.

Hi,

Wow, 4 days seems too long if you are not running it on reads. Did you try adjusting the number of threads (-t, --threads, by default 1)? How long is your monomer?

Could you please share the data with me at abzikadze@ucsd.edu? I will then take a look and see if you might need to adjust any defaults.

Hi,
Did you receive the letter from me named "CentromereArchitect #20 in github" ? Looking forward to your reply.