Merge branch 'master' into fixGFF3

cjmyers · web-flow · commit 28754f07753e · 2024-12-10T15:46:42.000-07:00
diff --git a/lib/summarize/summarizeSequence.js b/lib/summarize/summarizeSequence.js
@@ -27,7 +27,7 @@ function summarizeSequence (sequence, req, sbol, remote, graphUri) {
     encoding: sequence.encoding.toString(),
     elements: elements,
     formatted: formatSequence(elements),
-    blastUrl: encoding === 'http://www.chem.qmul.ac.uk/iupac/AminoAcid/'
+    blastUrl: encoding === 'AminoAcid'
       ? 'http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastp&PAGE_TYPE=BlastSearch&LINK_LOC=blasthome'
       : 'http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastn&PAGE_TYPE=BlastSearch&LINK_LOC=blasthome'
   }

Original file line number	Diff line number	Diff line change
`@@ -27,7 +27,7 @@ function summarizeSequence (sequence, req, sbol, remote, graphUri) {`
`27`	`27`	`encoding: sequence.encoding.toString(),`
`28`	`28`	`elements: elements,`
`29`	`29`	`formatted: formatSequence(elements),`
`30`		`- blastUrl: encoding === 'http://www.chem.qmul.ac.uk/iupac/AminoAcid/'`
	`30`	`+ blastUrl: encoding === 'AminoAcid'`
`31`	`31`	`? 'http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastp&PAGE_TYPE=BlastSearch&LINK_LOC=blasthome'`
`32`	`32`	`: 'http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastn&PAGE_TYPE=BlastSearch&LINK_LOC=blasthome'`
`33`	`33`	`}`