Build conda package #117
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| name: Build conda package | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| version: | |
| description: Version to package | |
| required: true | |
| build: | |
| description: "Build revision of package (default: 0)" | |
| required: false | |
| default: '0' | |
| jobs: | |
| build_package_linux-64: | |
| name: Build conda package for linux-64 | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| variant: ["r43", "r44"] | |
| env: | |
| ANACONDA_API_KEY: ${{ secrets.ANACONDA_API_TOKEN }} | |
| ANACONDA_OWNER: ${{ vars.ANACONDA_OWNER }} | |
| steps: | |
| - name: Checkout pull request branch | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup pixi | |
| uses: prefix-dev/[email protected] | |
| with: | |
| run-install: false | |
| - name: Create recipe from template | |
| shell: pixi exec --spec sed --spec coreutils --spec wget -- bash -e {0} | |
| run: | | |
| mkdir /tmp/recipe | |
| cp .github/recipe/recipe.yaml /tmp/recipe/recipe.yaml | |
| cp .github/recipe/variant_${{ matrix.variant}}.yaml /tmp/recipe/variants.yaml | |
| version=${{ github.event.inputs.version }} | |
| build=${{ github.event.inputs.build }} | |
| wget https://github.com/StatFunGen/pecotmr/archive/${version}.tar.gz | |
| sha256sum=$(sha256sum ${version}.tar.gz | cut -d ' ' -f 1) | |
| sed -i "s/VERSION_PLACEHOLDER/${version}/g" /tmp/recipe/recipe.yaml | |
| sed -i "s/SHA256SUM_PLACEHOLDER/${sha256sum}/g" /tmp/recipe/recipe.yaml | |
| sed -i "s/BUILD_PLACEHOLDER/${build}/g" /tmp/recipe/recipe.yaml | |
| - name: Setup up docker buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Build and export docker containers | |
| uses: docker/build-push-action@v6 | |
| with: | |
| load: true | |
| file: .github/rattler-build_container.df | |
| tags: rattler-build:latest | |
| - name: Build conda packages | |
| run: | | |
| docker run --rm --volume /tmp:/tmp \ | |
| --volume /etc/passwd:/etc/passwd:ro \ | |
| --volume /etc/group:/etc/group:ro \ | |
| --volume $(pwd) --workdir $(pwd) \ | |
| --user $(id -u) rattler-build \ | |
| rattler-build build -c dnachun -c conda-forge -c bioconda \ | |
| --output-dir /tmp/rattler-build --recipe-dir /tmp/recipe | |
| - name: Upload package | |
| shell: pixi exec --spec rattler-build -- bash -e {0} | |
| run: rattler-build upload anaconda --force /tmp/rattler-build/linux-64/*.conda | |
| build_package_osx-64: | |
| name: Build conda package for osx-64 | |
| runs-on: macos-13 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| variant: ["r43", "r44"] | |
| env: | |
| ANACONDA_API_KEY: ${{ secrets.ANACONDA_API_TOKEN }} | |
| ANACONDA_OWNER: ${{ vars.ANACONDA_OWNER }} | |
| steps: | |
| - name: Checkout pull request branch | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup pixi | |
| uses: prefix-dev/[email protected] | |
| with: | |
| run-install: false | |
| - name: Create recipe from template | |
| shell: pixi exec --spec sed --spec coreutils --spec wget -- bash -e {0} | |
| run: | | |
| mkdir /tmp/recipe | |
| cp .github/recipe/recipe.yaml /tmp/recipe/recipe.yaml | |
| cp .github/recipe/variant_${{ matrix.variant}}.yaml /tmp/recipe/variants.yaml | |
| version=${{ github.event.inputs.version }} | |
| build=${{ github.event.inputs.build }} | |
| wget https://github.com/StatFunGen/pecotmr/archive/${version}.tar.gz | |
| sha256sum=$(sha256sum ${version}.tar.gz | cut -d ' ' -f 1) | |
| sed -i "s/VERSION_PLACEHOLDER/${version}/g" /tmp/recipe/recipe.yaml | |
| sed -i "s/SHA256SUM_PLACEHOLDER/${sha256sum}/g" /tmp/recipe/recipe.yaml | |
| sed -i "s/BUILD_PLACEHOLDER/${build}/g" /tmp/recipe/recipe.yaml | |
| - name: Build conda package | |
| shell: pixi exec --spec rattler-build -- bash -e {0} | |
| run: rattler-build build -c dnachun -c conda-forge -c bioconda --output-dir /tmp/rattler-build --recipe-dir /tmp/recipe | |
| - name: Upload package | |
| shell: pixi exec --spec rattler-build -- bash -e {0} | |
| run: rattler-build upload anaconda --force /tmp/rattler-build/osx-64/*.conda | |
| build_package_osx-arm64: | |
| name: Build conda package for osx-arm64 | |
| runs-on: macos-14 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| variant: ["r43", "r44"] | |
| env: | |
| ANACONDA_API_KEY: ${{ secrets.ANACONDA_API_TOKEN }} | |
| ANACONDA_OWNER: ${{ vars.ANACONDA_OWNER }} | |
| steps: | |
| - name: Checkout pull request branch | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup pixi | |
| uses: prefix-dev/[email protected] | |
| with: | |
| run-install: false | |
| - name: Create recipe from template | |
| shell: pixi exec --spec sed --spec coreutils --spec wget -- bash -e {0} | |
| run: | | |
| mkdir /tmp/recipe | |
| cp .github/recipe/recipe.yaml /tmp/recipe/recipe.yaml | |
| cp .github/recipe/variant_${{ matrix.variant}}.yaml /tmp/recipe/variants.yaml | |
| version=${{ github.event.inputs.version }} | |
| build=${{ github.event.inputs.build }} | |
| wget https://github.com/StatFunGen/pecotmr/archive/${version}.tar.gz | |
| sha256sum=$(sha256sum ${version}.tar.gz | cut -d ' ' -f 1) | |
| sed -i "s/VERSION_PLACEHOLDER/${version}/g" /tmp/recipe/recipe.yaml | |
| sed -i "s/SHA256SUM_PLACEHOLDER/${sha256sum}/g" /tmp/recipe/recipe.yaml | |
| sed -i "s/BUILD_PLACEHOLDER/${build}/g" /tmp/recipe/recipe.yaml | |
| - name: Build conda package | |
| shell: pixi exec --spec rattler-build -- bash -e {0} | |
| run: rattler-build build -c dnachun -c conda-forge -c bioconda --output-dir /tmp/rattler-build --recipe-dir /tmp/recipe | |
| - name: Upload package | |
| shell: pixi exec --spec rattler-build -- bash -e {0} | |
| run: rattler-build upload anaconda --force /tmp/rattler-build/osx-arm64/*.conda |