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src/metatag/database/preprocessing.py

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"""
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import logging
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import re
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from pathlib import Path
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import pyfastx

src/metatag/phylotree.py

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from pathlib import Path
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# from Bio import Phylo
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import metatag.wrappers as wrappers
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from metatag.utils import easy_pattern_matching, set_default_output_path
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src/metatag/taxonomy.py

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import pandas as pd
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from metatag.database.labelparsers import LabelParser
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from metatag.utils import read_from_pickle_file, set_default_output_path
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class Taxopath:

src/metatag/utils.py

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import shutil
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import string
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import subprocess
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# import sys
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# import tarfile
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from functools import partial

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