move roc-validator to dev dependencies

Author: elichad

lib/galaxy/dependencies/dev-requirements.txt

@@ -17,12 +17,14 @@ boto3==1.37.1
 botocore==1.37.1
 build==1.2.2.post1
 cachecontrol==0.14.2
+cattrs==24.1.3
 certifi==2025.1.31
 cffi==1.17.1
 charset-normalizer==3.4.1
 click==8.1.8
 codespell==2.4.1
 colorama==0.4.6 ; os_name == 'nt' or sys_platform == 'win32'
+colorlog==6.9.0
 contourpy==1.3.0 ; python_full_version < '3.10'
 contourpy==1.3.1 ; python_full_version >= '3.10'
 coverage==7.8.0
@@ -36,6 +38,7 @@ defusedxml==0.7.1
 deprecated==1.2.18
 docutils==0.21.2
 dogpile-cache==1.3.4
+enum-tools==0.12.0 ; python_full_version >= '3.10'
 exceptiongroup==1.2.2 ; python_full_version < '3.11'
 filelock==3.18.0
 fluent-logger==0.11.1
@@ -45,14 +48,16 @@ galaxy-release-util==0.2.0
 graylint==1.1.1
 greenlet==3.1.1
 h11==0.14.0
+html5lib==1.1
 httpcore==1.0.7
 httpx==0.28.1
 id==1.5.0
 idna==3.10
 imagesize==1.4.1
-importlib-metadata==8.6.1 ; (python_full_version < '3.10.2' and platform_machine == 'ppc64le') or (python_full_version < '3.10.2' and platform_machine == 's390x') or (python_full_version < '3.12' and platform_machine != 'ppc64le' and platform_machine != 's390x')
+importlib-metadata==8.6.1 ; python_full_version < '3.12'
 importlib-resources==6.5.2 ; python_full_version < '3.10'
 iniconfig==2.1.0
+inquirerpy==0.3.4
 isodate==0.7.2 ; python_full_version < '3.11'
 isort==6.0.1
 jaraco-classes==3.4.0 ; platform_machine != 'ppc64le' and platform_machine != 's390x'
@@ -88,16 +93,19 @@ numpy==2.0.2 ; python_full_version < '3.10'
 numpy==2.2.4 ; python_full_version >= '3.10'
 onedatafilerestclient==21.2.5.2
 outcome==1.3.0.post0
+owlrl==6.0.2
 packaging==24.2
 pathspec==0.12.1
 pbr==6.1.1
+pfzy==0.3.4
 pillow==11.1.0
 pkce==1.0.3
 platformdirs==4.3.7
 playwright==1.51.0
 pluggy==1.5.0
 port-for==0.7.4
 prettytable==3.16.0
+prompt-toolkit==3.0.50
 propcache==0.3.1
 psutil==7.0.0 ; sys_platform != 'cygwin'
 psycopg==3.2.6
@@ -109,6 +117,7 @@ pyjwt==2.10.1
 pynacl==1.5.0
 pyparsing==3.2.3
 pyproject-hooks==1.2.0
+pyshacl==0.26.0
 pysocks==1.7.1
 pytest==7.4.4
 pytest-asyncio==0.23.8
@@ -131,10 +140,15 @@ rdflib==7.1.4
 readme-renderer==44.0
 referencing==0.36.2
 requests==2.32.3
+requests-cache==1.2.1
 requests-toolbelt==1.0.0
 responses==0.25.7
 rfc3986==2.0.0
 rich==13.9.4
+rich-click==1.8.8
+roc-validator==0.4.2 ; python_full_version < '3.9.20'
+roc-validator==0.4.6 ; python_full_version >= '3.9.20' and python_full_version < '3.10'
+roc-validator==0.6.3 ; python_full_version >= '3.10'
 roman-numerals-py==3.1.0 ; python_full_version >= '3.11'
 rpds-py==0.24.0
 ruamel-yaml==0.18.10
@@ -179,13 +193,15 @@ twine==6.1.0
 typing-extensions==4.12.2 ; python_full_version < '3.10'
 typing-extensions==4.13.0 ; python_full_version >= '3.10'
 tzdata==2025.2 ; sys_platform == 'win32'
+url-normalize==2.2.0
 urllib3==1.26.20 ; python_full_version < '3.10'
 urllib3==2.3.0 ; python_full_version >= '3.10'
 watchdog==6.0.0
 wcwidth==0.2.13
+webencodings==0.5.1
 websocket-client==1.8.0
 werkzeug==3.1.3
 wrapt==1.17.2
 wsproto==1.2.0
 yarl==1.18.3
-zipp==3.21.0 ; (python_full_version < '3.10.2' and platform_machine == 'ppc64le') or (python_full_version < '3.10.2' and platform_machine == 's390x') or (python_full_version < '3.12' and platform_machine != 'ppc64le' and platform_machine != 's390x')
+zipp==3.21.0 ; python_full_version < '3.12'

lib/galaxy/dependencies/pinned-requirements.txt

@@ -33,7 +33,6 @@ boto==2.49.0
 botocore==1.37.1
 bx-python==0.13.0
 cachecontrol==0.14.2
-cattrs==24.1.3
 celery==5.5.0
 certifi==2025.1.31
 cffi==1.17.1
@@ -47,7 +46,6 @@ cloudauthz==0.6.0
 cloudbridge==3.2.0
 colorama==0.4.6 ; sys_platform == 'win32'
 coloredlogs==15.0.1
-colorlog==6.9.0
 conda-package-streaming==0.11.0
 cryptography==44.0.2
 ct3==3.4.0
@@ -64,7 +62,6 @@ docutils==0.21.2
 dparse==0.6.4
 edam-ontology==1.25.2
 email-validator==2.2.0
-enum-tools==0.12.0 ; python_full_version >= '3.10'
 exceptiongroup==1.2.2 ; python_full_version < '3.11'
 fastapi-slim==0.115.12
 filelock==3.18.0
@@ -80,12 +77,10 @@ gxformat2==0.20.0
 h11==0.14.0
 h5grove==2.3.0
 h5py==3.13.0
-html5lib==1.1
 humanfriendly==10.0
 idna==3.10
 importlib-metadata==8.6.1
 importlib-resources==6.5.2 ; python_full_version < '3.12'
-inquirerpy==0.3.4
 isa-rwval @ git+https://github.com/nsoranzo/isa-rwval.git@3d989181058d2765a93cb0e7ca85d6955e0eb6ef
 isal==1.7.2
 isodate==0.7.2 ; python_full_version < '3.11'
@@ -119,18 +114,14 @@ numpy==2.0.2 ; python_full_version < '3.10'
 numpy==2.2.4 ; python_full_version >= '3.10'
 oauthlib==3.2.2
 orjson==3.10.16
-owlrl==6.0.2
 oyaml==1.0
 packaging==24.2
 paramiko==3.5.1
 parsley==1.3
 paste==3.10.1
 pastedeploy==3.1.0
 pebble==5.1.1
-pfzy==0.3.4
 pillow==11.1.0
-platformdirs==4.3.7
-prettytable==3.16.0
 prompt-toolkit==3.0.50
 propcache==0.3.1
 prov==1.5.1
@@ -153,7 +144,6 @@ pyparsing==3.2.3
 pypng==0.20220715.0
 pyreadline3==3.5.4 ; sys_platform == 'win32'
 pysam==0.23.0
-pyshacl==0.26.0
 python-dateutil==2.9.0.post0
 python-magic==0.4.27
 python-multipart==0.0.20
@@ -168,16 +158,11 @@ refgenconf==0.12.2
 regex==2024.11.6
 repoze-lru==0.7
 requests==2.32.3
-requests-cache==1.2.1
 requests-oauthlib==2.0.0
 requests-toolbelt==1.0.0
 requests-unixsocket==0.4.1
 rich==13.9.4
 rich-argparse==1.7.0
-rich-click==1.8.8
-roc-validator==0.4.2 ; python_full_version < '3.9.20'
-roc-validator==0.4.6 ; python_full_version >= '3.9.20' and python_full_version < '3.10'
-roc-validator==0.6.3 ; python_full_version >= '3.10'
 rocrate==0.13.0
 routes==2.5.1
 rpds-py==0.24.0
@@ -205,7 +190,6 @@ text-unidecode==1.3
 tifffile==2024.8.30 ; python_full_version < '3.10'
 tifffile==2025.3.30 ; python_full_version >= '3.10'
 tinydb==4.8.2
-toml==0.10.2
 tomli==2.2.1 ; python_full_version < '3.11'
 tornado==6.4.2
 tqdm==4.67.1
@@ -217,7 +201,6 @@ typing-inspection==0.4.0
 tzdata==2025.2
 tzlocal==5.3.1
 ubiquerg==0.8.1
-url-normalize==2.2.0
 urllib3==1.26.20 ; python_full_version < '3.10'
 urllib3==2.3.0 ; python_full_version >= '3.10'
 uvicorn==0.34.0

pyproject.toml

@@ -85,7 +85,6 @@ dependencies = [
     "refgenconf>=0.12.0",
     "regex",
     "requests",
-    "roc-validator",
     "rocrate",
     "Routes",
     "s3fs>=2023.1.0",
@@ -146,6 +145,7 @@ dev = [
     "pytest-postgresql!=3.0.0",  # https://github.com/ClearcodeHQ/pytest-postgresql/issues/426
     "pytest-shard",
     "responses",
+    "roc-validator",
     "rucio-clients>=33.6.0",
     "selenium",
     "seletools",