diff --git a/environment.yml b/environment.yml index c9b67f569..f47ae00d9 100644 --- a/environment.yml +++ b/environment.yml @@ -29,7 +29,7 @@ dependencies: # - tensorboard - umap-learn # stats - - pingouin + - pingouin<0.6.0 - statsmodels # other - tqdm # progress bars diff --git a/project/01_1_train_NAGuideR_methods.R b/project/01_1_train_NAGuideR_methods.R index 3918a663c..302d5cb10 100644 --- a/project/01_1_train_NAGuideR_methods.R +++ b/project/01_1_train_NAGuideR_methods.R @@ -6,7 +6,7 @@ # extension: .R # format_name: light # format_version: '1.5' -# jupytext_version: 1.15.0 +# jupytext_version: 1.16.4 # kernelspec: # display_name: R # language: R @@ -479,5 +479,5 @@ dim(pred) fname = file.path(folder_experiment, 'preds', paste0('pred_all_', toupper(method), '.csv')) -write_csv(pred, path = fname) +write_csv(pred, fname) fname diff --git a/project/01_1_train_NAGuideR_methods.ipynb b/project/01_1_train_NAGuideR_methods.ipynb index f6a7a6a1b..02c290b3d 100644 --- a/project/01_1_train_NAGuideR_methods.ipynb +++ b/project/01_1_train_NAGuideR_methods.ipynb @@ -655,7 +655,7 @@ "fname = file.path(folder_experiment,\n", " 'preds',\n", " paste0('pred_all_', toupper(method), '.csv'))\n", - "write_csv(pred, path = fname)\n", + "write_csv(pred, fname)\n", "fname" ] } diff --git a/project/workflow/envs/pimms.yaml b/project/workflow/envs/pimms.yaml index da9a6f386..b305ecb4e 100644 --- a/project/workflow/envs/pimms.yaml +++ b/project/workflow/envs/pimms.yaml @@ -29,7 +29,7 @@ dependencies: # - tensorboard - umap-learn # stats - - pingouin + - pingouin<0.6.0 - statsmodels # other - tqdm # progress bars diff --git a/pyproject.toml b/pyproject.toml index 0a462e9f3..0a108d57f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -27,7 +27,7 @@ dependencies = [ "matplotlib", "plotly", # not used in library, but workflow "omegaconf", - "pingouin", + "pingouin<0.6.0", "njab>=0.1", ]